RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 E7EWF7 191 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 NMT2O60551 498 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 POLR3DP05423 398 aaPredicted RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 CASTP20810 708 aaKnown RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 LORP23490 312 aaPredicted RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 MCCP23508 829 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 LMOD1P29536 600 aaPredicted RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 EPHX2P34913 555 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ANTXR2P58335 489 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 C1QTNF8P60827 252 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 HDLBPQ00341 1268 aaKnown RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 CENPCQ03188 943 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 RRP1BQ14684 758 aaKnown RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 EAPPQ56P03 285 aaPredicted RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 FAM47AQ5JRC9 791 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 CYB5R4Q7L1T6 521 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 RAB11FIP4Q86YS3 637 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ZSCAN29Q8IWY8 852 aaPredicted RBP6.18□□□□□ -1.42
SPG11-220ENST00000559933 SVOPQ8N4V2 548 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 DPF2Q92785 391 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 KCNB2Q92953 911 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 CHMP4CQ96CF2 233 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ZKSCAN3Q9BRR0 538 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 RRAGCQ9HB90 399 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ZMYM6O95789 1325 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ATRNL1Q5VV63 1379 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 ROBO3Q96MS0 1386 aa6.18□□□□□ -1.42
SPG11-220ENST00000559933 B4E1Z4 1266 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 H7C1D1 291 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 ZNF213O14771 459 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 GDF11O95390 407 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 LARGE1O95461 756 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 JAG1P78504 1218 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 KRT76Q01546 638 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 RASA3Q14644 834 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 ALX1Q15699 326 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 IMMTQ16891 758 aaKnown RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 RNFT1Q5M7Z0 435 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 C12orf60Q5U649 245 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 MIGA2Q7L4E1 593 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 RASGRP2Q7LDG7 609 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 CCDC84Q86UT8 332 aaPredicted RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 TICAM2Q86XR7 235 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 MB21D2Q8IYB1 491 aaPredicted RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 PHTF2Q8N3S3 785 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 PLPP7Q8NBV4 271 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 STAG1Q8WVM7 1258 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 MRIQ9BWK5 157 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 IDI2Q9BXS1 227 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 NACAP1Q9BZK3 213 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 TAF1DQ9H5J8 278 aaPredicted RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 ADARB2Q9NS39 739 aaKnown RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 TOMM22Q9NS69 142 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 ATP8A2Q9NTI2 1148 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 TMOD2Q9NZR1 351 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 ARPP21Q9UBL0 812 aaPredicted RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 PGAP2Q9UHJ9 254 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.17□□□□□ -1.42
SPG11-220ENST00000559933 POLR2AP24928 1970 aaKnown RBP6.17□□□□□ -1.42
SPG11-220ENST00000559933 OTOFQ9HC10 1997 aa6.17□□□□□ -1.42
SPG11-220ENST00000559933 SCN4AP35499 1836 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 TRAF5O00463 557 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 PRC1O43663 620 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 MYO1BO43795 1136 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 IL2RAP01589 272 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 F11P03951 625 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 AKR1B1P15121 316 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 ZKSCAN1P17029 563 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 RPS6KB1P23443 525 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 SHMT1P34896 483 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 CDK8P49336 464 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 AK2P54819 239 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 MAP3K10Q02779 954 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 PRKG1Q13976 671 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 TOB2Q14106 344 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 TSGA10IPQ3SY00 556 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 SBK1Q52WX2 424 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 AKNAD1Q5T1N1 836 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 NBPF12Q5TAG4 269 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 MAP1SQ66K74 1059 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 MOB2Q70IA6 237 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 PGBD3Q8N328 593 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 ZNF837Q96EG3 531 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 TEPSINQ96N21 525 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 TTC14Q96N46 770 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 CSRNP1Q96S65 589 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 GLIS2Q9BZE0 524 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 DEFB129Q9H1M3 183 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 CUEDC1Q9NWM3 386 aaPredicted RBP6.16□□□□□ -1.42
SPG11-220ENST00000559933 CTNNA3Q9UI47 895 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 MYH8P13535 1937 aa6.16□□□□□ -1.42
SPG11-220ENST00000559933 COL2A1P02458 1487 aaPredicted RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 GREB1LQ9C091 1923 aaPredicted RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 A0A1B0GTH6 734 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 RANBP6O60518 1105 aaKnown RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 ENTPD3O75355 529 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 HLA-DOAP06340 250 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 RXRAP19793 462 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 RASA1P20936 1047 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 PHKA2P46019 1235 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms