RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ACER1Q8TDN7 264 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 ANP32BQ92688 251 aaKnown RBP14.47□□□□□ -0.09
USP3-213ENST00000559711 PPP1R9BQ96SB3 815 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 DEFB129Q9H1M3 183 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 RIC8AQ9NPQ8 531 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 GINM1Q9NU53 330 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 GPRC5DQ9NZD1 345 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 KIAA1468Q9P260 1216 aa14.47□□□□□ -0.09
USP3-213ENST00000559711 ASTN2O75129 1339 aaPredicted RBP14.47□□□□□ -0.09
USP3-213ENST00000559711 MCM7P33993 719 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 ECE1P42892 770 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 QRICH1Q2TAL8 776 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 SPECC1Q5M775 1068 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 SYT17Q9BSW7 474 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 GLT8D2Q9H1C3 349 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 GOPCQ9HD26 462 aa14.46□□□□□ -0.09
USP3-213ENST00000559711 TMEM232C9JQI7 657 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 CCDC173Q0VFZ6 552 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 ORC2Q13416 577 aaPredicted RBP14.46□□□□□ -0.1
USP3-213ENST00000559711 LONRF3Q496Y0 759 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 ANO6Q4KMQ2 910 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 SYDE2Q5VT97 1194 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 KRBA2Q6ZNG9 492 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 NUP88Q99567 741 aaPredicted RBP14.46□□□□□ -0.1
USP3-213ENST00000559711 SH2D4AQ9H788 454 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 VCPKMTQ9H867 229 aa14.46□□□□□ -0.1
USP3-213ENST00000559711 LAD1O00515 517 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 PLA2G6O60733 806 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 CLK2P49760 499 aaKnown RBP14.45□□□□□ -0.1
USP3-213ENST00000559711 MRPL12P52815 198 aaKnown RBP14.45□□□□□ -0.1
USP3-213ENST00000559711 CDC37Q16543 378 aaPredicted RBP14.45□□□□□ -0.1
USP3-213ENST00000559711 IL17AQ16552 155 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 STX1AQ16623 288 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 KIAA1755Q5JYT7 1200 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 USP49Q70CQ1 688 aa14.45□□□□□ -0.1
USP3-213ENST00000559711 BIN2Q9UBW5 565 aaPredicted RBP14.45□□□□□ -0.1
USP3-213ENST00000559711 SCAF8Q9UPN6 1271 aaKnown RBP14.45□□□□□ -0.1
USP3-213ENST00000559711 POLR2DO15514 142 aaKnown RBP14.44□□□□□ -0.1
USP3-213ENST00000559711 CTNND1O60716 968 aaKnown RBP14.44□□□□□ -0.1
USP3-213ENST00000559711 PRPHP41219 470 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 MDM2Q00987 491 aaPredicted RBP14.44□□□□□ -0.1
USP3-213ENST00000559711 JAKMIP3Q5VZ66 844 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 NEK8Q86SG6 692 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 APOBEC3FQ8IUX4 373 aaKnown RBP14.44□□□□□ -0.1
USP3-213ENST00000559711 TRPM4Q8TD43 1214 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 TBCKQ8TEA7 893 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 CUL5Q93034 780 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 PDLIM2Q96JY6 352 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 PSTPIP2Q9H939 334 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 ANO10Q9NW15 660 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 TUBE1Q9UJT0 475 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 PCDHA1Q9Y5I3 950 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 MYH4Q9Y623 1939 aa14.44□□□□□ -0.1
USP3-213ENST00000559711 VWA3AA6NCI4 1184 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 LONP1P36776 959 aaKnown RBP14.43□□□□□ -0.1
USP3-213ENST00000559711 SPICE1Q8N0Z3 855 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 CNNM3Q8NE01 707 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 SYMPKQ92797 1274 aaKnown RBP14.43□□□□□ -0.1
USP3-213ENST00000559711 EPSTI1Q96J88 318 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 AMNQ9BXJ7 453 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 CBX8Q9HC52 389 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 TMEM260Q9NX78 707 aa14.43□□□□□ -0.1
USP3-213ENST00000559711 ACTN4O43707 911 aaKnown RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 ZNF165P49910 485 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 STAT2P52630 851 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 NBPF12Q5TAG4 269 aaPredicted RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 ANGEL2Q5VTE6 544 aaKnown RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 KANK3Q6NY19 840 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 FBXO11Q86XK2 927 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 CHURC1Q8WUH1 139 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 ERCC4Q92889 916 aaPredicted RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 HOOK2Q96ED9 719 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 DNAJC25Q9H1X3 360 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 TMEM60Q9H2L4 133 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 HOOK1Q9UJC3 728 aaKnown RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 ZNF112Q9UJU3 913 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 PRR12Q9ULL5 1215 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 EDIL3O43854 480 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 EPS15P42566 896 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 HIRAP54198 1017 aaPredicted RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 IKQ13123 557 aaPredicted RBP14.42□□□□□ -0.1
USP3-213ENST00000559711 LETM2Q2VYF4 491 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 FAM83BQ5T0W9 1011 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 DCAF15Q66K64 600 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 DTHD1Q6ZMT9 781 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 TEX2Q8IWB9 1127 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 USP25Q9UHP3 1055 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 SERTAD1Q9UHV2 236 aa14.42□□□□□ -0.1
USP3-213ENST00000559711 A0A087X0B3 334 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 CCNT1O60563 726 aaKnown RBP14.41□□□□□ -0.1
USP3-213ENST00000559711 SLFN14P0C7P3 912 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 YBX3P16989 372 aaKnown RBP eCLIP14.41□□□□□ -0.13e-6■■■□□ 16.3
USP3-213ENST00000559711 NLRP12P59046 1061 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 TRAF1Q13077 416 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 IQCB1Q15051 598 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 UBE2SQ16763 222 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 MCTP2Q6DN12 878 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 FAM160B2Q86V87 743 aa14.41□□□□□ -0.1
USP3-213ENST00000559711 PYM1Q9BRP8 204 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms