RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 CLMNQ96JQ2 1002 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 SYT15Q9BQS2 421 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 FAM167BQ9BTA0 163 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 CCDC28BQ9BUN5 200 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 MIS12Q9H081 205 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 SSH2Q76I76 1423 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PIK3R4Q99570 1358 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 FAM25EA8MYX2 175 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 MAP3K13O43283 966 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PORP16435 677 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 S100A5P33763 92 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 TUBA4AP68366 448 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PDCLQ13371 301 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 AGAP9Q5VTM2 703 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 HIBCHQ6NVY1 386 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 PLEKHM2Q8IWE5 1019 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PDILTQ8N807 584 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 ACMSDQ8TDX5 336 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 RIN2Q8WYP3 895 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 RUBCNQ92622 972 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 PTPRN2Q92932 1015 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 HPS3Q969F9 1004 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 CATSPER2Q96P56 530 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 HAPLN3Q96S86 360 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 HNRNPABQ99729 332 aaKnown RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 SCAND2PQ9GZW5 306 aaPredicted RBP9.35□□□□□ -0.91
USP3-211ENST00000559257 COMMD3-BMI1R4GMX3 469 aa9.35□□□□□ -0.91
USP3-211ENST00000559257 HECW2Q9P2P5 1572 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 RHOXF2BP0C7M4 288 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 SKIP12755 728 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 PPP4CP60510 307 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 LSAMPQ13449 338 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 SPIDRQ14159 915 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 CFAP100Q494V2 611 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 GRAMD4Q6IC98 578 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 C11orf57Q6ZUT1 292 aaPredicted RBP9.34□□□□□ -0.91
USP3-211ENST00000559257 UBE3BQ7Z3V4 1068 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 TTC6Q86TZ1 520 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 C1orf131Q8NDD1 294 aaKnown RBP9.34□□□□□ -0.91
USP3-211ENST00000559257 RHOXF2Q9BQY4 288 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 CARD9Q9H257 536 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 ATP8A2Q9NTI2 1148 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 KIAA1210Q9ULL0 1709 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 ARHGAP5Q13017 1502 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 SYCP2Q9BX26 1530 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 IQSEC2Q5JU85 1478 aa9.34□□□□□ -0.91
USP3-211ENST00000559257 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 C5orf60A6NFR6 353 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 WNT7AO00755 349 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 WFS1O76024 890 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 ATP2A2P16615 1042 aaKnown RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 ATP6V1C1P21283 382 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 NFKBIAP25963 317 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 GSTT1P30711 240 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 ACADVLP49748 655 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 SERPINB8P50452 374 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 USP14P54578 494 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 MRPS25P82663 173 aaKnown RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 DAAM2Q86T65 1068 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 RNF10Q8N5U6 811 aaKnown RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 CCDC63Q8NA47 563 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 RNF25Q96BH1 459 aaPredicted RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 CYFIP2Q96F07 1278 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 KCNMB3Q9NPA1 279 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 PCDHB2Q9Y5E7 798 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 IQGAP1P46940 1657 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 POTEFA5A3E0 1075 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 PRPF3O43395 683 aaKnown RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 SLC26A4O43511 780 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 PPP1R7Q15435 360 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 ZNF362Q5T0B9 420 aaPredicted RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 CCDC122Q5T0U0 273 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 PPP4R3AQ6IN85 833 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 IRGCQ6NXR0 463 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 KLC3Q6P597 504 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 SCAIQ8N9R8 606 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 CCT6BQ92526 530 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 TIPINQ9BVW5 301 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 NAA15Q9BXJ9 866 aaKnown RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 ZNF304Q9HCX3 659 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 CABP1Q9NZU7 370 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 MTMR6Q9Y217 621 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 FADS3Q9Y5Q0 445 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 NPHP4O75161 1426 aaPredicted RBP9.33□□□□□ -0.92
USP3-211ENST00000559257 NOS1P29475 1434 aa9.33□□□□□ -0.92
USP3-211ENST00000559257 HSPA1AP0DMV8 641 aaKnown RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 HSPA1BP0DMV9 641 aaKnown RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 TUBP50607 506 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 APBA1Q02410 837 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 TRIM71Q2Q1W2 868 aaKnown RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 P3H1Q32P28 736 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 KAZNQ674X7 775 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 TMEM154Q6P9G4 183 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 RAB11FIP4Q86YS3 637 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 THEMISQ8N1K5 641 aaPredicted RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 SETDB2Q96T68 719 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 XPO4Q9C0E2 1151 aaKnown RBP9.32□□□□□ -0.92
USP3-211ENST00000559257 DRC3Q9H069 523 aa9.32□□□□□ -0.92
USP3-211ENST00000559257 DHX36Q9H2U1 1008 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms