RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CYP2C18P33260 490 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 GJA9P57773 515 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 MRPS5P82675 430 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 ACVR2BQ13705 512 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 RAB30Q15771 203 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 CCDC174Q6PII3 467 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 ZNF467Q7Z7K2 595 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 TMEM199Q8N511 208 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 PCSK9Q8NBP7 692 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 HERVK_113Q902F9 699 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 DDX11Q96FC9 970 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 KATNBL1Q9H079 304 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 IL23AQ9NPF7 189 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 PAG1Q9NWQ8 432 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 SIP14410 1827 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 MYH6P13533 1939 aa9.83□□□□□ -0.84
CCDC88C-214ENST00000557507 ASTN1O14525 1302 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 NDUFB10O96000 172 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 SLC4A3P48751 1232 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 RABGGTBP53611 331 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 BEX3Q00994 111 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 GNASQ5JWF2 1037 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 CTR9Q6PD62 1173 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 ARMCX2Q7L311 632 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 CPXCR1Q8N123 301 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 BCL11AQ9H165 835 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 MSRAQ9UJ68 235 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 KIAA1217Q5T5P2 1943 aa9.82□□□□□ -0.84
CCDC88C-214ENST00000557507 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 ATP2A1O14983 1001 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 TLR3O15455 904 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 MYOGP15173 224 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 RASA1P20936 1047 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 TFF2Q03403 129 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 CXCL17Q6UXB2 119 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 OTOP2Q7RTS6 562 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 AMOTL1Q8IY63 956 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 CCDC144CPQ8IYA2 1237 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 CLASRPQ8N2M8 674 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 VTI1AQ96AJ9 217 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 VWCEQ96DN2 955 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 WNT8AQ9H1J5 351 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 BOLA2Q9H3K6 86 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 ABHD16BQ9H3Z7 469 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 SPC25Q9HBM1 224 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 RAVER2Q9HCJ3 691 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 SLC4A4Q9Y6R1 1079 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 DDX49Q9Y6V7 483 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 ATG2AQ2TAZ0 1938 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 GRIN2DO15399 1336 aa9.81□□□□□ -0.84
CCDC88C-214ENST00000557507 MYH7BA7E2Y1 1941 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 F5H6K3 240 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 IFIT2P09913 472 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 KCNQ1P51787 676 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 CCL23P55773 120 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 NKX3-2P78367 333 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 CNTN2Q02246 1040 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 KLRC3Q07444 240 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 HSP90AB4PQ58FF6 505 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 PPP2R2DQ66LE6 453 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 STK11IPQ8N1F8 1099 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 ANKRD35Q8N283 1001 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 MICALL1Q8N3F8 863 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 SLC43A3Q8NBI5 491 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 IL27Q8NEV9 243 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 PANK1Q8TE04 598 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 KIFC2Q96AC6 838 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 FAM122AQ96E09 287 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 KIF1BPQ96EK5 621 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 NOC4LQ9BVI4 516 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 PUS7LQ9H0K6 701 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 HIPK3Q9H422 1215 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 SLC28A3Q9HAS3 691 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 SLC38A10Q9HBR0 1119 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 NYAP2Q9P242 653 aa9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 ARPP21Q9UBL0 812 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-214ENST00000557507 NLRC5Q86WI3 1866 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 MICAL3Q7RTP6 2002 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 IGKV6D-41A0A0C4DH26 115 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 FGBP02675 491 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 BMP1P13497 986 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 UBE3CQ15386 1083 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 TLK2Q86UE8 772 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 SIRT2Q8IXJ6 389 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 LRRC47Q8N1G4 583 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 PRPF38AQ8NAV1 312 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 DDRGK1Q96HY6 314 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 HAUS7Q99871 368 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 MTIF3Q9H2K0 278 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 HOMER2Q9NSB8 354 aa9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 GNEQ9Y223 722 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-214ENST00000557507 MYO7AQ13402 2215 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 SOWAHBA6NEL2 793 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 B4GALT4O60513 344 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 ZBED4O75132 1171 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 ATP5JP18859 108 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 PSMC6P62333 389 aa9.78□□□□□ -0.84
CCDC88C-214ENST00000557507 HNRNPUQ00839 825 aaKnown RBP eCLIP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms