RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ZBTB5O15062 677 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 NEMFO60524 1076 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 SMC2O95347 1197 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 EEF2P13639 858 aaKnown RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 SLC1A4P43007 532 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 ADCY7P51828 1080 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 EIF6P56537 245 aaKnown RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 ATP2B2Q01814 1243 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 DHX8Q14562 1220 aaKnown RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 ZNF174Q15697 407 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 EARS2Q5JPH6 523 aaKnown RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 CT47A1Q5JQC4 288 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 SARM1Q6SZW1 724 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 MTMR8Q96EF0 704 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 SH2D4AQ9H788 454 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 ARHGEF10LQ9HCE6 1279 aa14.35□□□□□ -0.11
SHMT2-229ENST00000557348 ATF5Q9Y2D1 282 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-229ENST00000557348 SIPA1L1O43166 1804 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 CCDC66A2RUB6 948 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 FAM205CA6NFA0 338 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 CXCL9Q07325 125 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 LUZP1Q86V48 1076 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 ADGRF4Q8IZF3 695 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 ZBED3Q96IU2 234 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-229ENST00000557348 AK8Q96MA6 479 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 GINM1Q9NU53 330 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 PCDHAC2Q9Y5I4 1007 aa14.34□□□□□ -0.11
SHMT2-229ENST00000557348 FRMPD2Q68DX3 1309 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-229ENST00000557348 POLR2DO15514 142 aaKnown RBP14.33□□□□□ -0.11
SHMT2-229ENST00000557348 MCM7P33993 719 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 MRPL12P52815 198 aaKnown RBP14.33□□□□□ -0.11
SHMT2-229ENST00000557348 SEMA3FQ13275 785 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 IQCB1Q15051 598 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 POSTNQ15063 836 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 SLFN13Q68D06 897 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 TYW1BQ6NUM6 668 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 NEK8Q86SG6 692 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 JMJD4Q9H9V9 463 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 GPCPD1Q9NPB8 672 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 RIC8AQ9NPQ8 531 aa14.33□□□□□ -0.11
SHMT2-229ENST00000557348 FER1L6Q2WGJ9 1857 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 IKBKBO14920 756 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 TUBB4AP04350 444 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 SLFN14P0C7P3 912 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 VEGFAP15692 232 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-229ENST00000557348 CDC25BP30305 580 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 ZNF280AP59817 542 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-229ENST00000557348 SEPT2Q15019 361 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 LONRF3Q496Y0 759 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 NT5DC1Q5TFE4 455 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 DTHD1Q6ZMT9 781 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 IQUBQ8NA54 791 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 DPF2Q92785 391 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 CUL5Q93034 780 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 SGIP1Q9BQI5 828 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 UBA5Q9GZZ9 404 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 VAT1LQ9HCJ6 419 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 GOPCQ9HD26 462 aa14.33□□□□□ -0.12
SHMT2-229ENST00000557348 COL4A5P29400 1685 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 VWA3AA6NCI4 1184 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 TCP10L2B9ZVM9 353 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 ACTN4O43707 911 aaKnown RBP14.32□□□□□ -0.12
SHMT2-229ENST00000557348 PLCB2Q00722 1185 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 C11orf57Q6ZUT1 292 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-229ENST00000557348 SYMPKQ92797 1274 aaKnown RBP14.32□□□□□ -0.12
SHMT2-229ENST00000557348 SMARCE1Q969G3 411 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 MAGEF1Q9HAY2 307 aa14.32□□□□□ -0.12
SHMT2-229ENST00000557348 BRCA1P38398 1863 aaKnown RBP14.32□□□□□ -0.12
SHMT2-229ENST00000557348 KIF2AO00139 706 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-229ENST00000557348 GH2P01242 217 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 MYL1P05976 194 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 GCFC2P16383 781 aaKnown RBP14.31□□□□□ -0.12
SHMT2-229ENST00000557348 MDM2Q00987 491 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-229ENST00000557348 INF2Q27J81 1249 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 MLKLQ8NB16 471 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 HOOK2Q96ED9 719 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 CUEDC2Q9H467 287 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 VEZTQ9HBM0 779 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 MYOZ2Q9NPC6 264 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 CNTNAP1P78357 1384 aa14.31□□□□□ -0.12
SHMT2-229ENST00000557348 CLRN2A0PK11 232 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 F5H6K3 240 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 NFKBIEO00221 500 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 MAP3K10Q02779 954 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 GRIN1Q05586 938 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 KLRC3Q07444 240 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 BTNL9Q6UXG8 535 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 CLEC10AQ8IUN9 316 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 C4orf32Q8N8J7 132 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 MRFAP1L1Q96HT8 127 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 RAB34Q9BZG1 259 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 TRIM5Q9C035 493 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 SERTAD1Q9UHV2 236 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 BCS1LQ9Y276 419 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 ZBTB12Q9Y330 459 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-229ENST00000557348 OR52Z1P0C646 297 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 BMP3P12645 472 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 AP3B2Q13367 1082 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 PNOCQ13519 176 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms