RNA–Protein interactions for RNA: ENST00000556607.1

SPTLC2-205, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

TSL 3

Gene SPTLC2, Length 460 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-205ENST00000556607 NUCB1Q02818 461 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 TRIM60Q495X7 471 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 CWC27Q6UX04 472 aaKnown RBP12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 MFSD6Q6ZSS7 791 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 PLEKHM2Q8IWE5 1019 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 MSL3Q8N5Y2 521 aaKnown RBP12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 LENG1Q96BZ8 264 aaPredicted RBP12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 TRERF1Q96PN7 1200 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 RNF146Q9NTX7 359 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 TACC3Q9Y6A5 838 aa12.48□□□□□ -0.41
SPTLC2-205ENST00000556607 FRMPD2Q68DX3 1309 aaPredicted RBP12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 SYNGAP1Q96PV0 1343 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 DNAJC25-GNG10A0A024R161 153 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 POTEB2H3BUK9 544 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 ZNF213O14771 459 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 SNAI1O95863 264 aaPredicted RBP12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 ACVR2BQ13705 512 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 NOL8Q76FK4 1167 aaKnown RBP12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 ARMCX2Q7L311 632 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 RASGRP2Q7LDG7 609 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 DCAF4Q8WV16 495 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 VTI1AQ96AJ9 217 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 GPCPD1Q9NPB8 672 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 CCPG1Q9ULG6 757 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 PRR12Q9ULL5 1215 aa12.47□□□□□ -0.41
SPTLC2-205ENST00000556607 HIP1O00291 1037 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 C6orf222P0C671 652 aaPredicted RBP12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 TOP1P11387 765 aaKnown RBP12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 SLC16A2P36021 539 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 CNTN2Q02246 1040 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 TKFCQ3LXA3 575 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 AKNAD1Q5T1N1 836 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 TTBK2Q6IQ55 1244 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 MAMDC4Q6UXC1 1216 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 NSMFQ6X4W1 530 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 ZNF467Q7Z7K2 595 aaPredicted RBP12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 TICAM2Q86XR7 235 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 CCDC144CPQ8IYA2 1237 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 TMEM47Q9BQJ4 181 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 ZKSCAN3Q9BRR0 538 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 ABHD16BQ9H3Z7 469 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 RNF41Q9H4P4 317 aaPredicted RBP12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 SPC25Q9HBM1 224 aa12.46□□□□□ -0.41
SPTLC2-205ENST00000556607 LTBP2Q14767 1821 aa12.46□□□□□ -0.42
SPTLC2-205ENST00000556607 ZNF536O15090 1300 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 A0A1W2PQ45 241 aaPredicted RBP12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 A0A1W2PQY0 241 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 PLA2G6O60733 806 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 IRX6P78412 446 aaPredicted RBP12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 CCDC144BQ3MJ40 725 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 NUP133Q8WUM0 1156 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 ESR2Q92731 530 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 OSBPL3Q9H4L5 887 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 A1CFQ9NQ94 594 aaKnown RBP12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 STARD7Q9NQZ5 370 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 PHF24Q9UPV7 400 aa12.45□□□□□ -0.42
SPTLC2-205ENST00000556607 ZMYM6O95789 1325 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 SYNRGQ9UMZ2 1314 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 ASB14A6NK59 587 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 PQBP1O60828 265 aaKnown RBP12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 DUSP11O75319 330 aaKnown RBP12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 FGRP09769 529 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 ACLYP53396 1101 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 TLE2Q04725 743 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 KCNA10Q16322 511 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 LRIT3Q3SXY7 679 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 MUM1L1Q5H9M0 696 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 SYDE2Q5VT97 1194 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 EEPD1Q7L9B9 569 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 BADQ92934 168 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 TSEN34Q9BSV6 310 aaKnown RBP12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 TCP11L1Q9NUJ3 509 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 LAMA4Q16363 1823 aa12.44□□□□□ -0.42
SPTLC2-205ENST00000556607 PTPDC1A2A3K4 754 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 MOXD2PA6NHM9 499 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 ADAMTS4O75173 837 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 ICAM1P05362 532 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 CLTBP09497 229 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 PCP11498 1178 aaKnown RBP12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 GNASQ5JWF2 1037 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 SH3RF1Q7Z6J0 888 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 IQCA1Q86XH1 822 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 TBC1D10CQ8IV04 446 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 DEFB123Q8N688 67 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 PCSK9Q8NBP7 692 aaKnown RBP12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 FGD4Q96M96 766 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 GLT1D1Q96MS3 346 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 TTC14Q96N46 770 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 PDLIM7Q9NR12 457 aa12.43□□□□□ -0.42
SPTLC2-205ENST00000556607 NEDD4P46934 1319 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 DNAH12Q6ZR08 3092 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 CEP290O15078 2479 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 TRIM43BA6NCK2 446 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 MYADML2A6NDP7 307 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 SOWAHBA6NEL2 793 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 DCDC2CA8MYV0 355 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 KDM4AO75164 1064 aa12.42□□□□□ -0.42
SPTLC2-205ENST00000556607 ASGR1P07306 291 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms