RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 LSRQ86X29 649 aaPredicted RBP6.56□□□□□ -1.36
SCFD1-218ENST00000556256 FAM161BQ96MY7 647 aa6.56□□□□□ -1.36
SCFD1-218ENST00000556256 SUSD2Q9UGT4 822 aa6.56□□□□□ -1.36
SCFD1-218ENST00000556256 ANKRD33BA6NCL7 494 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 VAV1P15498 845 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 MVKQ03426 396 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 KCNA1Q09470 495 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 TARBP2Q15633 366 aaKnown RBP6.55□□□□□ -1.36
SCFD1-218ENST00000556256 NT5DC1Q5TFE4 455 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 CDCP2Q5VXM1 449 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 LIPIQ6XZB0 460 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 FNIP1Q8TF40 1166 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 BRMS1Q9HCU9 246 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 AP5S1Q9NUS5 200 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 PCDHB14Q9Y5E9 798 aa6.55□□□□□ -1.36
SCFD1-218ENST00000556256 CLEC3AO75596 197 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 ATE1O95260 518 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 MSL3P1P0C860 447 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 FOXO4P98177 505 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 PWP1Q13610 501 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 OVOS1Q6IE37 1185 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 TMC4Q7Z404 712 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 EAF1Q96JC9 268 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-218ENST00000556256 SPATA25Q9BR10 227 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 CNNM2Q9H8M5 875 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 USP40Q9NVE5 1235 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 GFOD1Q9NXC2 390 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 PALD1Q9ULE6 856 aa6.54□□□□□ -1.36
SCFD1-218ENST00000556256 SUPT5HO00267 1087 aaKnown RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 AKAP8O43823 692 aaKnown RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 PLA2G1BP04054 148 aaKnown RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 ATF2P15336 505 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 FBLN1P23142 703 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 MAGEA10P43363 369 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 ZNF827Q17R98 1081 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 CWF19L2Q2TBE0 894 aaKnown RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 AEBP1Q8IUX7 1158 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 ZNF526Q8TF50 670 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-218ENST00000556256 ATG4CQ96DT6 458 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 PLA2G2DQ9UNK4 145 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 HCFC2Q9Y5Z7 792 aa6.53□□□□□ -1.36
SCFD1-218ENST00000556256 XPCQ01831 940 aaPredicted RBP6.52□□□□□ -1.37
SCFD1-218ENST00000556256 RTP2Q5QGT7 225 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 FBXL19Q6PCT2 694 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 SAPCD2Q86UD0 394 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 TMEM192Q8IY95 271 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 CRELD1Q96HD1 420 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 FBXL21Q9UKT6 434 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 DUSP10Q9Y6W6 482 aa6.52□□□□□ -1.37
SCFD1-218ENST00000556256 A0A1W2PQ27 194 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 A0A1W2PQ64 194 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 A0A1W2PQC6 194 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 A0A1W2PQD8 194 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 CCNFP41002 786 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 PAQR3Q6TCH7 311 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 CRTC3Q6UUV7 619 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 DDX1Q92499 740 aaKnown RBP6.51□□□□□ -1.37
SCFD1-218ENST00000556256 EHMT1Q9H9B1 1298 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 PCDHB12Q9Y5F1 795 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 PMF1-BGLAPU3KQ54 211 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 ROBO2Q9HCK4 1378 aa6.51□□□□□ -1.37
SCFD1-218ENST00000556256 SH3D21A4FU49 640 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 CYBBP04839 570 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 TNFRSF1AP19438 455 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 HTRA3P83110 453 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 ZXDAP98168 799 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 AUHQ13825 339 aaKnown RBP6.5□□□□□ -1.37
SCFD1-218ENST00000556256 NLRC3Q7RTR2 1065 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 LRRC3Q9BY71 257 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 KRTAP9-8Q9BYQ0 159 aa6.5□□□□□ -1.37
SCFD1-218ENST00000556256 MKRN2Q9H000 416 aaKnown RBP6.5□□□□□ -1.37
SCFD1-218ENST00000556256 NOBOXO60393 691 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 GREM1O60565 184 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 DBHP09172 617 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 PRR5P85299 388 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 DLX2Q07687 328 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-218ENST00000556256 HLA-DQA1Q5Y7H0 255 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 ANTXR1Q9H6X2 564 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 KCNQ5Q9NR82 932 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 KBTBD4Q9NVX7 518 aa6.49□□□□□ -1.37
SCFD1-218ENST00000556256 SRGAP3O43295 1099 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 GSNP06396 782 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 GSTM1P09488 218 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 CNR2P34972 360 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 ADAM17P78536 824 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 BICRALQ6AI39 1079 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 JAMLQ86YT9 394 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 SLC6A18Q96N87 628 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 SLC12A9Q9BXP2 914 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 COPRSQ9NQ92 184 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 SMPD4Q9NXE4 827 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 FAN1Q9Y2M0 1017 aa6.48□□□□□ -1.37
SCFD1-218ENST00000556256 A0A1W2PQJ5 194 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 F8W031 263 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-218ENST00000556256 ITGB3P05106 788 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 CRKP46108 304 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 NAT16Q8N8M0 369 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 RBM15Q96T37 977 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCFD1-218ENST00000556256 LNPKQ9C0E8 428 aa6.47□□□□□ -1.37
SCFD1-218ENST00000556256 RNF38Q9H0F5 515 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms