RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 GPR161Q8N6U8 529 aaKnown RBP16.59■□□□□ 0.25
CUX1-215ENST00000556210 RBM17Q96I25 401 aaKnown RBP16.59■□□□□ 0.25
CUX1-215ENST00000556210 POTEMA6NI47 508 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 CXCR5P32302 372 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 TBC1D10BQ4KMP7 808 aaPredicted RBP16.58■□□□□ 0.25
CUX1-215ENST00000556210 NCAPH2Q6IBW4 605 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 OR8K1Q8NGG5 319 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 FAM107BQ9H098 131 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 RASSF4Q9H2L5 321 aa16.58■□□□□ 0.25
CUX1-215ENST00000556210 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.58■□□□□ 0.25
CUX1-215ENST00000556210 SRGAP2O75044 1071 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 CD44P16070 742 aaKnown RBP16.58■□□□□ 0.24
CUX1-215ENST00000556210 PAFAH1B1P43034 410 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 TROAPQ12815 778 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 NEK8Q86SG6 692 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 TMTC1Q8IUR5 882 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 BRIP1Q9BX63 1249 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 COL5A2P05997 1499 aaPredicted RBP16.58■□□□□ 0.24
CUX1-215ENST00000556210 WNT7AO00755 349 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 PLCG2P16885 1265 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 ERCC5P28715 1186 aaPredicted RBP16.58■□□□□ 0.24
CUX1-215ENST00000556210 ADCY7P51828 1080 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 SP4Q02446 784 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 FAM114A1Q8IWE2 563 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 TRIML1Q8N9V2 468 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 TUBGCP2Q9BSJ2 902 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 TUBE1Q9UJT0 475 aa16.58■□□□□ 0.24
CUX1-215ENST00000556210 EPN1Q9Y6I3 576 aaPredicted RBP16.58■□□□□ 0.24
CUX1-215ENST00000556210 DDX39AO00148 427 aaKnown RBP16.57■□□□□ 0.24
CUX1-215ENST00000556210 SLURP2P0DP57 97 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 RGS22Q8NE09 1264 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 JAKMIP2Q96AA8 810 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 CEP95Q96GE4 821 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 TMOD2Q9NZR1 351 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 POTEB2H3BUK9 544 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 BUB1O43683 1085 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 RDH13Q8NBN7 331 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 IFT81Q8WYA0 676 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 TMEM60Q9H2L4 133 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 TACC3Q9Y6A5 838 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 FXR1P51114 621 aaKnown RBP eCLIP16.57■□□□□ 0.24
CUX1-215ENST00000556210 CLEC4GQ6UXB4 293 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 CEP112Q8N8E3 955 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 BCCIPQ9P287 314 aaKnown RBP eCLIP16.57■□□□□ 0.24
CUX1-215ENST00000556210 NARFQ9UHQ1 456 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 PNPLA7Q6ZV29 1317 aa16.57■□□□□ 0.24
CUX1-215ENST00000556210 MEIS1O00470 390 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 GDF11O95390 407 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 BMP6P22004 513 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 TXNRD1Q16881 649 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 KRT25Q7Z3Z0 450 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 SMCR8Q8TEV9 937 aaPredicted RBP16.56■□□□□ 0.24
CUX1-215ENST00000556210 CHP1Q99653 195 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 A0A087X0B3 334 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 SPDYE3A6NKU9 549 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 TAF4BQ92750 862 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 RIOK1Q9BRS2 568 aaKnown RBP16.56■□□□□ 0.24
CUX1-215ENST00000556210 MRPL44Q9H9J2 332 aaKnown RBP16.56■□□□□ 0.24
CUX1-215ENST00000556210 TRIM10Q9UDY6 481 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 LTN1O94822 1766 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 XDHP47989 1333 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 RPS6KA4O75676 772 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 FCER1AP12319 257 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 PFKFB3Q16875 520 aaPredicted RBP16.56■□□□□ 0.24
CUX1-215ENST00000556210 PARD6BQ9BYG5 372 aa16.56■□□□□ 0.24
CUX1-215ENST00000556210 PHLPP2Q6ZVD8 1323 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 WDR19Q8NEZ3 1342 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 BICDL2A1A5D9 508 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 H0YHG0 523 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 CNOT6LQ96LI5 555 aaKnown RBP16.55■□□□□ 0.24
CUX1-215ENST00000556210 CFBP00751 764 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 MRPL12P52815 198 aaKnown RBP16.55■□□□□ 0.24
CUX1-215ENST00000556210 KRT83P78385 493 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 IRX5P78411 483 aaPredicted RBP16.55■□□□□ 0.24
CUX1-215ENST00000556210 HDXQ7Z353 690 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 STK36Q9NRP7 1315 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 PRR16Q569H4 304 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 PHF20Q9BVI0 1012 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 CD209Q9NNX6 404 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 HDAC6Q9UBN7 1215 aa16.55■□□□□ 0.24
CUX1-215ENST00000556210 ACTN4O43707 911 aaKnown RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 DISC1Q9NRI5 854 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 PCDHA12Q9UN75 941 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 SPATA31A1Q5TZJ5 1347 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 A0A0U1RQJ8 604 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 FGFR1OPO95684 399 aaKnown RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 GRIK5Q16478 980 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 SYCP3Q8IZU3 236 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 ATRIPQ8WXE1 791 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 CUL5Q93034 780 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 LUC7LQ9NQ29 371 aaKnown RBP16.54■□□□□ 0.24
CUX1-215ENST00000556210 HPSEQ9Y251 543 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L15C9J2P7 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L13C9JLJ4 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L11C9JVI0 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L18D6R9N7 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L22D6RA61 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L17D6RBQ6 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L19D6RCP7 530 aa16.54■□□□□ 0.24
CUX1-215ENST00000556210 USP17L20D6RJB6 530 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms