RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 FAM122AQ96E09 287 aa14.12□□□□□ -0.15
SRP54-203ENST00000553544 PUS7LQ9H0K6 701 aaKnown RBP14.12□□□□□ -0.15
SRP54-203ENST00000553544 MTIF3Q9H2K0 278 aaKnown RBP14.12□□□□□ -0.15
SRP54-203ENST00000553544 ABHD16BQ9H3Z7 469 aa14.12□□□□□ -0.15
SRP54-203ENST00000553544 SLC28A3Q9HAS3 691 aa14.12□□□□□ -0.15
SRP54-203ENST00000553544 SALL3Q9BXA9 1300 aa14.12□□□□□ -0.15
SRP54-203ENST00000553544 DNAJC25-GNG10A0A024R161 153 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 SLC4A3P48751 1232 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 GJA9P57773 515 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 ADGRE1Q14246 886 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 CCDC144BQ3MJ40 725 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 SNRNP48Q6IEG0 339 aaKnown RBP14.11□□□□□ -0.15
SRP54-203ENST00000553544 C16orf86Q6ZW13 317 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 PI4K2BQ8TCG2 481 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 OTUD7AQ8TE49 926 aaPredicted RBP14.11□□□□□ -0.15
SRP54-203ENST00000553544 HERVK_113Q902F9 699 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 SLF1Q9BQI6 1058 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 PPP1R12CQ9BZL4 782 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 IL23AQ9NPF7 189 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 CTDP1Q9Y5B0 961 aaPredicted RBP14.11□□□□□ -0.15
SRP54-203ENST00000553544 CHD9Q3L8U1 2897 aa14.11□□□□□ -0.15
SRP54-203ENST00000553544 CYP2D7A0A087X1C5 515 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 MYADML2A6NDP7 307 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 ZBED4O75132 1171 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 PLA2G5P39877 138 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 FAM126BQ8IXS8 530 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 ANKRD35Q8N283 1001 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 STRBPQ96SI9 672 aaKnown RBP14.1□□□□□ -0.15
SRP54-203ENST00000553544 UPF3AQ9H1J1 476 aaKnown RBP14.1□□□□□ -0.15
SRP54-203ENST00000553544 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.1□□□□□ -0.15
SRP54-203ENST00000553544 RIPK3Q9Y572 518 aa14.1□□□□□ -0.15
SRP54-203ENST00000553544 PARP14Q460N5 1801 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 SMIM22K7EJ46 135 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 ATP2A1O14983 1001 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 ZFYP08048 801 aaPredicted RBP14.09□□□□□ -0.15
SRP54-203ENST00000553544 CYP2C18P33260 490 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 IRX5P78411 483 aaPredicted RBP14.09□□□□□ -0.15
SRP54-203ENST00000553544 CPXCR1Q8N123 301 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 APPBP2Q92624 585 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 OSBP2Q969R2 916 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 NKX2-4Q9H2Z4 354 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 SLC4A4Q9Y6R1 1079 aa14.09□□□□□ -0.15
SRP54-203ENST00000553544 A0A0G2JMZ2 1700 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 F5H6K3 240 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 ERC2O15083 957 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 RNF113AO15541 343 aaKnown RBP14.08□□□□□ -0.16
SRP54-203ENST00000553544 CABYRO75952 493 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 CD4P01730 458 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 MX1P20591 662 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 KLRC3Q07444 240 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
SRP54-203ENST00000553544 AAK1Q2M2I8 961 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 CTR9Q6PD62 1173 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 RPUSD2Q8IZ73 545 aaKnown RBP14.08□□□□□ -0.16
SRP54-203ENST00000553544 NUP88Q99567 741 aaPredicted RBP14.08□□□□□ -0.16
SRP54-203ENST00000553544 C1QTNF1Q9BXJ1 281 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 SEZ6LQ9BYH1 1024 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 CXXC1Q9P0U4 656 aaPredicted RBP14.08□□□□□ -0.16
SRP54-203ENST00000553544 FBXO40Q9UH90 709 aa14.08□□□□□ -0.16
SRP54-203ENST00000553544 GREB1LQ9C091 1923 aaPredicted RBP14.07□□□□□ -0.16
SRP54-203ENST00000553544 GSG1L2A8MUP6 293 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 BMP1P13497 986 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 NKX3-2P78367 333 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 ANKRD45Q5TZF3 282 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 GIMAP6Q6P9H5 292 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 NOL8Q76FK4 1167 aaKnown RBP14.07□□□□□ -0.16
SRP54-203ENST00000553544 ARMCX2Q7L311 632 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 OTOP2Q7RTS6 562 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 CHST13Q8NET6 341 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.07□□□□□ -0.16
SRP54-203ENST00000553544 HIPK3Q9H422 1215 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 MKNK2Q9HBH9 465 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 NYAP2Q9P242 653 aa14.07□□□□□ -0.16
SRP54-203ENST00000553544 ADCY6O43306 1168 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 ZEB2O60315 1214 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 TNFAIP2Q03169 654 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 SBK1Q52WX2 424 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.06□□□□□ -0.16
SRP54-203ENST00000553544 SMC5Q8IY18 1101 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 CCDC144CPQ8IYA2 1237 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 SLC43A3Q8NBI5 491 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 KIFC2Q96AC6 838 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 SLC38A10Q9HBR0 1119 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 RAVER2Q9HCJ3 691 aaKnown RBP14.06□□□□□ -0.16
SRP54-203ENST00000553544 CLIP2Q9UDT6 1046 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 YBX2Q9Y2T7 364 aaKnown RBP14.06□□□□□ -0.16
SRP54-203ENST00000553544 SLC4A7Q9Y6M7 1214 aa14.06□□□□□ -0.16
SRP54-203ENST00000553544 M0R2C6 588 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 CTAGE5O15320 804 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 GPAA1O43292 621 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 NDUFB10O96000 172 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 OAZ1P54368 228 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 CCL23P55773 120 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 BEX3Q00994 111 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 ITGA7Q13683 1181 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 LRRFIP1Q32MZ4 808 aaKnown RBP14.05□□□□□ -0.16
SRP54-203ENST00000553544 CXCL17Q6UXB2 119 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 EXOC6Q8TAG9 804 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 AP5M1Q9H0R1 490 aa14.05□□□□□ -0.16
SRP54-203ENST00000553544 ARPP21Q9UBL0 812 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms