RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 RNF146Q9NTX7 359 aa21.5■■□□□ 1.03
SHMT2-206ENST00000553529 LRRC37A2A6NM11 1700 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 PGK1P00558 417 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 PDHBP11177 359 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 TOP1P11387 765 aaKnown RBP21.49■■□□□ 1.03
SHMT2-206ENST00000553529 CHMLP26374 656 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 FXR1P51114 621 aaKnown RBP eCLIP21.49■■□□□ 1.03
SHMT2-206ENST00000553529 FERMT2Q96AC1 680 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 DDX11Q96FC9 970 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 DSCC1Q9BVC3 393 aa21.49■■□□□ 1.03
SHMT2-206ENST00000553529 A1CFQ9NQ94 594 aaKnown RBP21.49■■□□□ 1.03
SHMT2-206ENST00000553529 MYADML2A6NDP7 307 aa21.48■■□□□ 1.03
SHMT2-206ENST00000553529 COL9A3Q14050 684 aaPredicted RBP21.48■■□□□ 1.03
SHMT2-206ENST00000553529 FAM160B2Q86V87 743 aa21.48■■□□□ 1.03
SHMT2-206ENST00000553529 ANKRD35Q8N283 1001 aa21.48■■□□□ 1.03
SHMT2-206ENST00000553529 TCP11L1Q9NUJ3 509 aa21.48■■□□□ 1.03
SHMT2-206ENST00000553529 CEP290O15078 2479 aa21.48■■□□□ 1.03
SHMT2-206ENST00000553529 SOWAHBA6NEL2 793 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 TMEM63BQ5T3F8 832 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 CYB5R4Q7L1T6 521 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 TICAM2Q86XR7 235 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 DCAF4Q8WV16 495 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 TRERF1Q96PN7 1200 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 SLC5A4Q9NY91 659 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 ZHX1Q9UKY1 873 aaPredicted RBP21.47■■□□□ 1.03
SHMT2-206ENST00000553529 NR2E3Q9Y5X4 410 aa21.47■■□□□ 1.03
SHMT2-206ENST00000553529 MFAP1P55081 439 aaKnown RBP21.46■■□□□ 1.03
SHMT2-206ENST00000553529 LRRC41Q15345 812 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 SYDE2Q5VT97 1194 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 CHURC1Q8WUH1 139 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 UBA5Q9GZZ9 404 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 SENP2Q9HC62 589 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 ZSWIM5Q9P217 1185 aa21.46■■□□□ 1.03
SHMT2-206ENST00000553529 HIP1O00291 1037 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 DNM1LO00429 736 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 NFIBO00712 420 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 COPB2P35606 906 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 OAZ1P54368 228 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 ZNF543Q08ER8 600 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 CHST13Q8NET6 341 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 ESR2Q92731 530 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 RANBP17Q9H2T7 1088 aaKnown RBP21.45■■□□□ 1.02
SHMT2-206ENST00000553529 ACAD9Q9H845 621 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.45■■□□□ 1.02
SHMT2-206ENST00000553529 CCPG1Q9ULG6 757 aa21.45■■□□□ 1.02
SHMT2-206ENST00000553529 DIS3Q9Y2L1 958 aaKnown RBP21.45■■□□□ 1.02
SHMT2-206ENST00000553529 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-206ENST00000553529 SOX1O00570 391 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-206ENST00000553529 ADCYAP1R1P41586 468 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 STOX1Q6ZVD7 989 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 ARMCX2Q7L311 632 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 CCDC144CPQ8IYA2 1237 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 ENAHQ8N8S7 591 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-206ENST00000553529 FAM133AQ8N9E0 248 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 KATNBL1Q9H079 304 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 XPNPEP3Q9NQH7 507 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 TNKSO95271 1327 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 DNAH12Q6ZR08 3092 aa21.44■■□□□ 1.02
SHMT2-206ENST00000553529 RANBP2P49792 3224 aaKnown RBP21.44■■□□□ 1.02
SHMT2-206ENST00000553529 MSCO60682 206 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 PLA2G6O60733 806 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 CYP21A2P08686 494 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 SNHG28P0DPA3 235 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 MAGEA10P43363 369 aaPredicted RBP21.43■■□□□ 1.02
SHMT2-206ENST00000553529 IMMTQ16891 758 aaKnown RBP21.43■■□□□ 1.02
SHMT2-206ENST00000553529 BTNL9Q6UXG8 535 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 NSMFQ6X4W1 530 aa21.43■■□□□ 1.02
SHMT2-206ENST00000553529 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.43■■□□□ 1.02
SHMT2-206ENST00000553529 ZSCAN10Q96SZ4 725 aaPredicted RBP21.43■■□□□ 1.02
SHMT2-206ENST00000553529 RNF41Q9H4P4 317 aaPredicted RBP21.43■■□□□ 1.02
SHMT2-206ENST00000553529 ADAMTS4O75173 837 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 ICAM1P05362 532 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 RTP1P59025 263 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 MDM2Q00987 491 aaPredicted RBP21.42■■□□□ 1.02
SHMT2-206ENST00000553529 MAMDC4Q6UXC1 1216 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 SLC30A10Q6XR72 485 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 EEPD1Q7L9B9 569 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 CHST3Q7LGC8 479 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 SYNRGQ9UMZ2 1314 aa21.42■■□□□ 1.02
SHMT2-206ENST00000553529 LTBP2Q14767 1821 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 SYNGAP1Q96PV0 1343 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 POTEB2H3BUK9 544 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 SGSM2O43147 1006 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 RARBP10826 455 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 ACVR2BQ13705 512 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 TRIM60Q495X7 471 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 PPP4R3BQ5MIZ7 849 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 PNMA1Q8ND90 353 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 CLEC4DQ8WXI8 215 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 GDF15Q99988 308 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 PDGFCQ9NRA1 345 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 CYP39A1Q9NYL5 469 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 CNPY2Q9Y2B0 182 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 ATP11BQ9Y2G3 1177 aa21.41■■□□□ 1.02
SHMT2-206ENST00000553529 TRIOBPQ9H2D6 2365 aa21.4■■□□□ 1.02
SHMT2-206ENST00000553529 KBTBD13C9JR72 458 aa21.4■■□□□ 1.02
SHMT2-206ENST00000553529 AKR1A1P14550 325 aa21.4■■□□□ 1.02
SHMT2-206ENST00000553529 CAPN2P17655 700 aa21.4■■□□□ 1.02
SHMT2-206ENST00000553529 BAATQ14032 418 aaPredicted RBP21.4■■□□□ 1.02
SHMT2-206ENST00000553529 CCDC144BQ3MJ40 725 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms