RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 FAM155AB1AL88 458 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-204ENST00000553335 C7P10643 843 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 CDC27P30260 824 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 ADD1P35611 737 aaKnown RBP11.3□□□□□ -0.6
TMEM260-204ENST00000553335 NOGQ13253 232 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 GRM1Q13255 1194 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 CYP4F22Q6NT55 531 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 CATSPERGQ6ZRH7 1159 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 CCDC83Q8IWF9 413 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 STAG2Q8N3U4 1231 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 NECAB1Q8N987 351 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 OXER1Q8TDS5 423 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 NUP88Q99567 741 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-204ENST00000553335 NCOA5Q9HCD5 579 aaKnown RBP11.3□□□□□ -0.6
TMEM260-204ENST00000553335 PNMA3Q9UL41 463 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 AGTPBP1Q9UPW5 1226 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.3□□□□□ -0.6
TMEM260-204ENST00000553335 RLFQ13129 1914 aa11.3□□□□□ -0.6
TMEM260-204ENST00000553335 GRXCR2A6NFK2 248 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 FLOT1O75955 427 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 HSP90AA1P07900 732 aaKnown RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 FDX1P10109 184 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 HOXA7P31268 230 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 AKAP17AQ02040 695 aaKnown RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 COG2Q14746 738 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 TREML2Q5T2D2 321 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 OTUD7BQ6GQQ9 843 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 BTNL9Q6UXG8 535 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 TMTC3Q6ZXV5 915 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 RASGRP2Q7LDG7 609 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 ANKRD23Q86SG2 305 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 TRIM22Q8IYM9 498 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 PRPF38AQ8NAV1 312 aaKnown RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 CAPNS2Q96L46 248 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 SLF1Q9BQI6 1058 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 LLPHQ9BRT6 129 aaKnown RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 UBA5Q9GZZ9 404 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 FAM217BQ9NTX9 383 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 RBM27Q9P2N5 1060 aaKnown RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 DAXXQ9UER7 740 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 SLC45A1Q9Y2W3 748 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 CTDP1Q9Y5B0 961 aaPredicted RBP11.29□□□□□ -0.6
TMEM260-204ENST00000553335 MYPNQ86TC9 1320 aa11.29□□□□□ -0.6
TMEM260-204ENST00000553335 PLEKHA8P1O95397 391 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 IFNAR1P17181 557 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 SLC16A2P36021 539 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 IRX3P78415 501 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 KIF23Q02241 960 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 SSRP1Q08945 709 aaKnown RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 CUL4AQ13619 759 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 MOGSQ13724 837 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 NTRK3Q16288 839 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 IFFO2Q5TF58 517 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 SYDE2Q5VT97 1194 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 TTBK2Q6IQ55 1244 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 ADGRF4Q8IZF3 695 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 CMTR1Q8N1G2 835 aaKnown RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 CCDC82Q8N4S0 544 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 SRBD1Q8N5C6 995 aaKnown RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 BRI3BPQ8WY22 251 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 SPZ1Q9BXG8 430 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 RNF26Q9BY78 433 aaPredicted RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 RIOX1Q9H6W3 641 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 VAT1LQ9HCJ6 419 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 ZCCHC17Q9NP64 241 aaKnown RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 HOXC10Q9NYD6 342 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 PRR12Q9ULL5 1215 aa11.28□□□□□ -0.6
TMEM260-204ENST00000553335 WDR33Q9C0J8 1336 aaKnown RBP11.28□□□□□ -0.6
TMEM260-204ENST00000553335 A0A0G2JMZ2 1700 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 POTEFA5A3E0 1075 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 BTBD19C9JJ37 291 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 PDHXO00330 501 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 PRPF3O43395 683 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 ZBED4O75132 1171 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 HSPA1AP0DMV8 641 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 HSPA1BP0DMV9 641 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 TM4SF4P48230 202 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 HMGN5P82970 282 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 TRAF1Q13077 416 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 GTF3C2Q8WUA4 911 aaPredicted RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 KIFC2Q96AC6 838 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 INTS4Q96HW7 963 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 SLC26A6Q9BXS9 759 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 SEC63Q9UGP8 760 aaKnown RBP11.27□□□□□ -0.61
TMEM260-204ENST00000553335 PPP1R9AQ9ULJ8 1098 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 SMC3Q9UQE7 1217 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 KIF3AQ9Y496 699 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 CNTNAP5Q8WYK1 1306 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 STK36Q9NRP7 1315 aa11.27□□□□□ -0.61
TMEM260-204ENST00000553335 DEXIO95424 95 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 FMNL1O95466 1100 aaPredicted RBP11.26□□□□□ -0.61
TMEM260-204ENST00000553335 ALDH1A1P00352 501 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 MAP2K2P36507 400 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 ST3GAL1Q11201 340 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 HOMER1Q86YM7 354 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 FAM184AQ8NB25 1140 aa11.26□□□□□ -0.61
TMEM260-204ENST00000553335 NSUN7Q8NE18 718 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms