RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 SCLYQ96I15 445 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 NOC4LQ9BVI4 516 aaKnown RBP15.6■□□□□ 0.09
VPS29-211ENST00000553128 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS29-211ENST00000553128 TEX13BQ9BXU2 312 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 TRPV6Q9H1D0 765 aa15.6■□□□□ 0.09
VPS29-211ENST00000553128 MTIF3Q9H2K0 278 aaKnown RBP15.6■□□□□ 0.09
VPS29-211ENST00000553128 PRRC2BQ5JSZ5 2229 aaKnown RBP15.59■□□□□ 0.09
VPS29-211ENST00000553128 MYH8P13535 1937 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 IPO8O15397 1037 aaKnown RBP15.59■□□□□ 0.09
VPS29-211ENST00000553128 TLL1O43897 1013 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 ARHGEF15O94989 841 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 AAK1Q2M2I8 961 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 TMEM31Q5JXX7 168 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 C12orf60Q5U649 245 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 C16orf86Q6ZW13 317 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 ARMCX2Q7L311 632 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 ZNF467Q7Z7K2 595 aaPredicted RBP15.59■□□□□ 0.09
VPS29-211ENST00000553128 CPXCR1Q8N123 301 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 CCDC17Q96LX7 622 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 SLF1Q9BQI6 1058 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 ABHD16BQ9H3Z7 469 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 SPC25Q9HBM1 224 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 GOPCQ9HD26 462 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 PCDHA11Q9Y5I1 949 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 SLC4A7Q9Y6M7 1214 aa15.59■□□□□ 0.09
VPS29-211ENST00000553128 DDX49Q9Y6V7 483 aaKnown RBP15.59■□□□□ 0.09
VPS29-211ENST00000553128 MCM3APO60318 1980 aa15.58■□□□□ 0.09
VPS29-211ENST00000553128 ZBBXA8MT70 800 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 GOLIM4O00461 696 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 B4GALT4O60513 344 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 MBD4O95243 580 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 CA3P07451 260 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 TTLL4Q14679 1199 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 CCDC144CPQ8IYA2 1237 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 KANSL2Q9H9L4 492 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 EXOC6BQ9Y2D4 811 aa15.58■□□□□ 0.08
VPS29-211ENST00000553128 BAZ2AQ9UIF9 1905 aaKnown RBP15.58■□□□□ 0.08
VPS29-211ENST00000553128 LRRC37A2A6NM11 1700 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 USP17L12C9JPN9 530 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 USP17L21D6R901 530 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 ATP2A2P16615 1042 aaKnown RBP15.57■□□□□ 0.08
VPS29-211ENST00000553128 PSMC6P62333 389 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 NKX3-2P78367 333 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 CNTN2Q02246 1040 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 ITGA7Q13683 1181 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 TTF1Q15361 905 aaPredicted RBP15.57■□□□□ 0.08
VPS29-211ENST00000553128 TMEM63BQ5T3F8 832 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 ALYREFQ86V81 257 aaKnown RBP15.57■□□□□ 0.08
VPS29-211ENST00000553128 AGBL1Q96MI9 1066 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 DNAJC2Q99543 621 aaKnown RBP15.57■□□□□ 0.08
VPS29-211ENST00000553128 RAVER2Q9HCJ3 691 aaKnown RBP15.57■□□□□ 0.08
VPS29-211ENST00000553128 IL1RAPL2Q9NP60 686 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 CD320Q9NPF0 282 aa15.57■□□□□ 0.08
VPS29-211ENST00000553128 POU3F3P20264 500 aaPredicted RBP15.56■□□□□ 0.08
VPS29-211ENST00000553128 SPRED2Q7Z698 418 aa15.56■□□□□ 0.08
VPS29-211ENST00000553128 ANKRD35Q8N283 1001 aa15.56■□□□□ 0.08
VPS29-211ENST00000553128 GNEQ9Y223 722 aaKnown RBP15.56■□□□□ 0.08
VPS29-211ENST00000553128 GPR37L1O60883 481 aa15.55■□□□□ 0.08
VPS29-211ENST00000553128 NDUFB10O96000 172 aa15.55■□□□□ 0.08
VPS29-211ENST00000553128 TNFAIP2Q03169 654 aa15.55■□□□□ 0.08
VPS29-211ENST00000553128 NOL8Q76FK4 1167 aaKnown RBP15.55■□□□□ 0.08
VPS29-211ENST00000553128 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.55■□□□□ 0.08
VPS29-211ENST00000553128 ATP8A2Q9NTI2 1148 aa15.55■□□□□ 0.08
VPS29-211ENST00000553128 WDFY4Q6ZS81 3184 aa15.55■□□□□ 0.08
VPS29-211ENST00000553128 F5H6K3 240 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 ATP2A1O14983 1001 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 GTPBP6O43824 516 aaPredicted RBP15.54■□□□□ 0.08
VPS29-211ENST00000553128 KLRC3Q07444 240 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 FSCN1Q16658 493 aaKnown RBP15.54■□□□□ 0.08
VPS29-211ENST00000553128 TMEM67Q5HYA8 995 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 CTR9Q6PD62 1173 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 DEFB128Q7Z7B8 93 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 TLK2Q86UE8 772 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 STK11IPQ8N1F8 1099 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 PRPF38AQ8NAV1 312 aaKnown RBP15.54■□□□□ 0.08
VPS29-211ENST00000553128 KIFC2Q96AC6 838 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 SLC38A10Q9HBR0 1119 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 HOMER2Q9NSB8 354 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 COG5Q9UP83 839 aa15.54■□□□□ 0.08
VPS29-211ENST00000553128 GREB1LQ9C091 1923 aaPredicted RBP15.53■□□□□ 0.08
VPS29-211ENST00000553128 SOWAHBA6NEL2 793 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 RBAK-RBAKDNI3L0D1 243 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 DYNC1LI2O43237 492 aaPredicted RBP15.53■□□□□ 0.08
VPS29-211ENST00000553128 CYP2C9P11712 490 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 RLBP1P12271 317 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 SMPD1P17405 629 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 ADD2P35612 726 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 TAP1Q03518 808 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 CEP85Q6P2H3 762 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 RPUSD2Q8IZ73 545 aaKnown RBP15.53■□□□□ 0.08
VPS29-211ENST00000553128 ARNTL2Q8WYA1 636 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 PDGFCQ9NRA1 345 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 TRMT13Q9NUP7 481 aaKnown RBP15.53■□□□□ 0.08
VPS29-211ENST00000553128 MUC6Q6W4X9 2439 aa15.53■□□□□ 0.08
VPS29-211ENST00000553128 ZBED9Q6R2W3 1325 aa15.52■□□□□ 0.08
VPS29-211ENST00000553128 ZNF316A6NFI3 1004 aaPredicted RBP15.52■□□□□ 0.08
VPS29-211ENST00000553128 ZBED4O75132 1171 aa15.52■□□□□ 0.08
VPS29-211ENST00000553128 CABYRO75952 493 aa15.52■□□□□ 0.08
VPS29-211ENST00000553128 ZKSCAN2Q63HK3 967 aa15.52■□□□□ 0.08
VPS29-211ENST00000553128 FAM133AQ8N9E0 248 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms