RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MOCS3O95396 460 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 DNA2P51530 1060 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ACTN3Q08043 901 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 FUT2Q10981 343 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 HLFQ16534 295 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 KANK3Q6NY19 840 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 KIAA1328Q86T90 577 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 LCORLQ8N3X6 602 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 HPS3Q969F9 1004 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 FAM107BQ9H098 131 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 ACBD3Q9H3P7 528 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 NHEJ1Q9H9Q4 299 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 LRRC4CQ9HCJ2 640 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 RWDD2AQ9UIY3 292 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 FAM184BQ9ULE4 1060 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 LUC7L2Q9Y383 392 aaKnown RBP5.43□□□□□ -1.54
LIMA1-214ENST00000552783 WDR17Q8IZU2 1322 aa5.43□□□□□ -1.54
LIMA1-214ENST00000552783 WTIPA6NIX2 430 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 NDUFAB1O14561 156 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 DEXIO95424 95 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 GLI1P08151 1106 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 MCM7P33993 719 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 IGHMBP2P38935 993 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 CARSP49589 748 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 KCNQ4P56696 695 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 AKNAD1Q5T1N1 836 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 MFSD6Q6ZSS7 791 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 TMC4Q7Z404 712 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 ADGRA1Q86SQ6 560 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF654Q8IZM8 581 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SPATA4Q8NEY3 305 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 ANKRD20A12PQ8NF67 263 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 PIK3R5Q8WYR1 880 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 TTYH3Q9C0H2 523 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 ZBTB1Q9Y2K1 713 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SLC4A4Q9Y6R1 1079 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SPEF2Q9C093 1822 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 LRP6O75581 1613 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SEMA3EO15041 775 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 HDLBPQ00341 1268 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 WTAPQ15007 396 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 HAUS3Q68CZ6 603 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC91Q7Z6B0 441 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 VGLL2Q8N8G2 317 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SDR42E1Q8WUS8 393 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 TNFRSF25Q93038 417 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 ZKSCAN4Q969J2 545 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 PHF20Q9BVI0 1012 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 RBM12Q9NTZ6 932 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 CAPN11Q9UMQ6 739 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SUFUQ9UMX1 484 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 LGALS16A8MUM7 142 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 RAD21O60216 631 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 NMT2O60551 498 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 RPN1P04843 607 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SLC5A1P13866 664 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 RNASE9P60153 205 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 NNTQ13423 1086 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 NAALADL2Q58DX5 795 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 FAM228AQ86W67 206 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 RASGRP4Q8TDF6 673 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 PURBQ96QR8 312 aaKnown RBP5.42□□□□□ -1.54
LIMA1-214ENST00000552783 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.42□□□□□ -1.542e-8■■■■■ 37.9
LIMA1-214ENST00000552783 NFU1Q9UMS0 254 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 MYH6P13533 1939 aa5.42□□□□□ -1.54
LIMA1-214ENST00000552783 SLIT3O75094 1523 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PATL2C9JE40 543 aaKnown RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PCCAP05165 728 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 CCDC172P0C7W6 258 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PDHBP11177 359 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 CYP7A1P22680 504 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 LSP1P33241 339 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 GUCY2FP51841 1108 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 TUBB4BP68371 445 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 SF3A3Q12874 501 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 RASGRF1Q13972 1273 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 UBE3CQ15386 1083 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 MEA1Q16626 185 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 NAA35Q5VZE5 725 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 SAMD1Q6SPF0 538 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PIK3AP1Q6ZUJ8 805 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PIGBQ92521 554 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 DUSP9Q99956 384 aaKnown RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 SLAIN2Q9P270 581 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 ARHGAP20Q9P2F6 1191 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 SNX12Q9UMY4 172 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 NIP7Q9Y221 180 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 PHRF1Q9P1Y6 1649 aaKnown RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 NUP188Q5SRE5 1749 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 MEFVO15553 781 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 SSBP05455 408 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 TUBBP07437 444 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 TRIM21P19474 475 aaKnown RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 ATP6V1AP38606 617 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 IFT88Q13099 833 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 TTC38Q5R3I4 469 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 ZNF658Q5TYW1 1059 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 TYW1BQ6NUM6 668 aa5.41□□□□□ -1.54
LIMA1-214ENST00000552783 DHX37Q8IY37 1157 aaKnown RBP5.41□□□□□ -1.54
LIMA1-214ENST00000552783 ADSSL1Q8N142 457 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms