RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 UPF3AQ9H1J1 476 aaKnown RBP15.3■□□□□ 0.04
PTCH1-221ENST00000550914 TMEM39AQ9NV64 488 aa15.3■□□□□ 0.04
PTCH1-221ENST00000550914 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-221ENST00000550914 ZHX1Q9UKY1 873 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-221ENST00000550914 CHD9Q3L8U1 2897 aa15.3■□□□□ 0.04
PTCH1-221ENST00000550914 PLA2G6O60733 806 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 FPGSQ05932 587 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 FAAP100Q0VG06 881 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 KCNA10Q16322 511 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 SLFN13Q68D06 897 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 GMCL1Q96IK5 515 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 RNPC3Q96LT9 517 aaKnown RBP15.29■□□□□ 0.04
PTCH1-221ENST00000550914 FGD4Q96M96 766 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 GLT1D1Q96MS3 346 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 CDX2Q99626 313 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-221ENST00000550914 SPC25Q9HBM1 224 aa15.29■□□□□ 0.04
PTCH1-221ENST00000550914 RAVER2Q9HCJ3 691 aaKnown RBP15.29■□□□□ 0.04
PTCH1-221ENST00000550914 STAT2P52630 851 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 GJA9P57773 515 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 NKX3-2P78367 333 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 CCDC144BQ3MJ40 725 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 ZMYM1Q5SVZ6 1142 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 FAM160B2Q86V87 743 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 LRRC47Q8N1G4 583 aaKnown RBP15.28■□□□□ 0.04
PTCH1-221ENST00000550914 PI4K2BQ8TCG2 481 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 CHURC1Q8WUH1 139 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 NAPBQ9H115 298 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 TBX21Q9UL17 535 aa15.28■□□□□ 0.04
PTCH1-221ENST00000550914 SPTBN5Q9NRC6 3674 aaKnown RBP15.28■□□□□ 0.04
PTCH1-221ENST00000550914 TIMP1P01033 207 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 C6orf222P0C671 652 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-221ENST00000550914 SLC4A3P48751 1232 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 CDK7P50613 346 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 EPHB4P54760 987 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 TFAP4Q01664 338 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 PPARAQ07869 468 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 TKFCQ3LXA3 575 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 ARMCX2Q7L311 632 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 FSD1Q9BTV5 496 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 TTYH1Q9H313 450 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-221ENST00000550914 ACAD9Q9H845 621 aa15.27■□□□□ 0.04
PTCH1-221ENST00000550914 TMEM232C9JQI7 657 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 ASGR1P07306 291 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 CCDC144CPQ8IYA2 1237 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 FAM133AQ8N9E0 248 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 STAG1Q8WVM7 1258 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 SEC62Q99442 399 aaKnown RBP15.26■□□□□ 0.03
PTCH1-221ENST00000550914 KATNBL1Q9H079 304 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 NCOR1O75376 2440 aa15.26■□□□□ 0.03
PTCH1-221ENST00000550914 ZNF536O15090 1300 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 A0A0U1RQG5 324 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 MYADML2A6NDP7 307 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 ASB14A6NK59 587 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 ADCY6O43306 1168 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 MX1P20591 662 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 SLC1A4P43007 532 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 GNASQ5JWF2 1037 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 MFSD5Q6N075 450 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 CCDC174Q6PII3 467 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 MAFAQ8NHW3 353 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 COL25A1Q9BXS0 654 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 A1CFQ9NQ94 594 aaKnown RBP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.25■□□□□ 0.03
PTCH1-221ENST00000550914 PCDHB15Q9Y5E8 787 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 LRRC37A2A6NM11 1700 aa15.25■□□□□ 0.03
PTCH1-221ENST00000550914 ARVCFO00192 962 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 CNTN2Q02246 1040 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 PPIGQ13427 754 aaKnown RBP eCLIP15.24■□□□□ 0.03
PTCH1-221ENST00000550914 RCSD1Q6JBY9 416 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 SEZ6LQ9BYH1 1024 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 HOMER2Q9NSB8 354 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 RNF146Q9NTX7 359 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 ANAPC4Q9UJX5 808 aa15.24■□□□□ 0.03
PTCH1-221ENST00000550914 LCTP09848 1927 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 CHD7Q9P2D1 2997 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TSPY2A6NKD2 308 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 CTAGE5O15320 804 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 FOXP2O15409 715 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TLR3O15455 904 aaKnown RBP15.23■□□□□ 0.03
PTCH1-221ENST00000550914 CABYRO75952 493 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 MCCP23508 829 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 NOVP48745 357 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TNFAIP2Q03169 654 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 IKQ13123 557 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 FAM126BQ8IXS8 530 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 OTUD7AQ8TE49 926 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-221ENST00000550914 MYLIPQ8WY64 445 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 VTI1AQ96AJ9 217 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 AGBL1Q96MI9 1066 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TRERF1Q96PN7 1200 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 ISY1Q9ULR0 285 aaKnown RBP15.23■□□□□ 0.03
PTCH1-221ENST00000550914 STX8Q9UNK0 236 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 TRANK1O15050 2925 aa15.23■□□□□ 0.03
PTCH1-221ENST00000550914 SALL3Q9BXA9 1300 aa15.22■□□□□ 0.03
PTCH1-221ENST00000550914 FOSL2P15408 326 aa15.22■□□□□ 0.03
PTCH1-221ENST00000550914 DNAJB2P25686 324 aa15.22■□□□□ 0.03
PTCH1-221ENST00000550914 ALX1Q15699 326 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms