RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 PRMT2P55345 433 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 CENPCQ03188 943 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 CHAF1AQ13111 956 aaPredicted RBP7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 NMIQ13287 307 aaPredicted RBP7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 SNAPC2Q13487 334 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 RASGRF1Q13972 1273 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 ZMYM1Q5SVZ6 1142 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 ZSCAN25Q6NSZ9 544 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 KIAA1211Q6ZU35 1233 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 ERO1BQ86YB8 467 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 NEDD1Q8NHV4 660 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 TRERF1Q96PN7 1200 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 MRIQ9BWK5 157 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 NUCKS1Q9H1E3 243 aaKnown RBP7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 ANTXR1Q9H6X2 564 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 GPAMQ9HCL2 828 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 ZCCHC17Q9NP64 241 aaKnown RBP7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 HELLSQ9NRZ9 838 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 SUGT1Q9Y2Z0 365 aa7.36□□□□□ -1.23
DEPDC4-209ENST00000550587 MX2P20592 715 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 ANP32AP39687 249 aaKnown RBP7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 MAP3K12Q12852 859 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 TSGA10IPQ3SY00 556 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 MCMDC2Q4G0Z9 681 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 WDR44Q5JSH3 913 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 TMED8Q6PL24 325 aaPredicted RBP7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 PI16Q6UXB8 463 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 FAM83AQ86UY5 434 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 ZNF592Q92610 1267 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 ARMC5Q96C12 935 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 FAM227BQ96M60 508 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 WRNIP1Q96S55 665 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 TMEM39BQ9GZU3 492 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 PCDHAC2Q9Y5I4 1007 aa7.35□□□□□ -1.23
DEPDC4-209ENST00000550587 A0A0D9SFI3 127 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 TLR2O60603 784 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 EN2P19622 333 aaPredicted RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 VGLL4Q14135 290 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 UBE3CQ15386 1083 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 SLC9C2Q5TAH2 1124 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 FKBP1CQ5VVH2 108 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 WDR66Q8TBY9 1149 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 MAP4K1Q92918 833 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 IL17RAQ96F46 866 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 ZDHHC15Q96MV8 337 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 PTPN18Q99952 460 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 ZNF341Q9BYN7 854 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 LSG1Q9H089 658 aaKnown RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 IL25Q9H293 177 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 ANO2Q9NQ90 1003 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 PIH1D3Q9NQM4 214 aaKnown RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 BIN2Q9UBW5 565 aaPredicted RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 IQSEC3Q9UPP2 1182 aaPredicted RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 HRH3Q9Y5N1 445 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 MYH7P12883 1935 aa7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 MYO5AQ9Y4I1 1855 aaKnown RBP7.34□□□□□ -1.23
DEPDC4-209ENST00000550587 TCRBV5S4A2TA0A5A2 114 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 IDH1O75874 414 aaKnown RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 STAU1O95793 577 aaKnown RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 MYCP01106 439 aaPredicted RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 IGHA1P01876 353 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 PDE6AP16499 860 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 MCCP23508 829 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ADD2P35612 726 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ANAPC15P60006 121 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 LACTBP83111 547 aaPredicted RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 PTH1RQ03431 593 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 PPATQ06203 517 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 PPIL2Q13356 520 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 SPTY2D1Q68D10 685 aaPredicted RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 HHIPL2Q6UWX4 724 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ZGPATQ8N5A5 531 aaKnown RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 RAET1EQ8TD07 263 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 BRI3BPQ8WY22 251 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 APPBP2Q92624 585 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 OSBP2Q969R2 916 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ZNF333Q96JL9 665 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 TEPSINQ96N21 525 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ZSCAN10Q96SZ4 725 aaPredicted RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 SEC62Q99442 399 aaKnown RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 KIF2CQ99661 725 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 LRP2BPQ9P2M1 347 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 PTCH2Q9Y6C5 1203 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 ZNF646O15015 1829 aaPredicted RBP7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 SSC5DA1L4H1 1573 aa7.33□□□□□ -1.24
DEPDC4-209ENST00000550587 CCDC171Q6TFL3 1326 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 ZNF532Q9HCE3 1301 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 SALL1Q9NSC2 1324 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 DOCK2Q92608 1830 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 PHF20L1A8MW92 1017 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 CHGBP05060 677 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 HSPA4P34932 840 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 UBXN2AP68543 259 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 NECTIN1Q15223 517 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 ERICH6Q7L0X2 663 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 ZNF589Q86UQ0 364 aaPredicted RBP7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 FAM43AQ8N2R8 423 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms