RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZHX1Q9UKY1 873 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-218ENST00000548945 CHD9Q3L8U1 2897 aa15.3■□□□□ 0.04
PTCH1-218ENST00000548945 PLA2G6O60733 806 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 FPGSQ05932 587 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 FAAP100Q0VG06 881 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 KCNA10Q16322 511 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 SLFN13Q68D06 897 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 GMCL1Q96IK5 515 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 RNPC3Q96LT9 517 aaKnown RBP15.29■□□□□ 0.04
PTCH1-218ENST00000548945 FGD4Q96M96 766 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 GLT1D1Q96MS3 346 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 CDX2Q99626 313 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-218ENST00000548945 SPC25Q9HBM1 224 aa15.29■□□□□ 0.04
PTCH1-218ENST00000548945 RAVER2Q9HCJ3 691 aaKnown RBP15.29■□□□□ 0.04
PTCH1-218ENST00000548945 STAT2P52630 851 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 GJA9P57773 515 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 NKX3-2P78367 333 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 CCDC144BQ3MJ40 725 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 ZMYM1Q5SVZ6 1142 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 FAM160B2Q86V87 743 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 LRRC47Q8N1G4 583 aaKnown RBP15.28■□□□□ 0.04
PTCH1-218ENST00000548945 PI4K2BQ8TCG2 481 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 CHURC1Q8WUH1 139 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 NAPBQ9H115 298 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 TBX21Q9UL17 535 aa15.28■□□□□ 0.04
PTCH1-218ENST00000548945 SPTBN5Q9NRC6 3674 aaKnown RBP15.28■□□□□ 0.04
PTCH1-218ENST00000548945 TIMP1P01033 207 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 C6orf222P0C671 652 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-218ENST00000548945 SLC4A3P48751 1232 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 CDK7P50613 346 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 EPHB4P54760 987 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 TFAP4Q01664 338 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 PPARAQ07869 468 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 TKFCQ3LXA3 575 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 ARMCX2Q7L311 632 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 FSD1Q9BTV5 496 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 TTYH1Q9H313 450 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-218ENST00000548945 ACAD9Q9H845 621 aa15.27■□□□□ 0.04
PTCH1-218ENST00000548945 TMEM232C9JQI7 657 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 ASGR1P07306 291 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 CCDC144CPQ8IYA2 1237 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 FAM133AQ8N9E0 248 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 STAG1Q8WVM7 1258 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 SEC62Q99442 399 aaKnown RBP15.26■□□□□ 0.03
PTCH1-218ENST00000548945 KATNBL1Q9H079 304 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 NCOR1O75376 2440 aa15.26■□□□□ 0.03
PTCH1-218ENST00000548945 ZNF536O15090 1300 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 A0A0U1RQG5 324 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 MYADML2A6NDP7 307 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 ASB14A6NK59 587 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 ADCY6O43306 1168 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 MX1P20591 662 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 SLC1A4P43007 532 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 GNASQ5JWF2 1037 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 MFSD5Q6N075 450 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 CCDC174Q6PII3 467 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 MAFAQ8NHW3 353 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 COL25A1Q9BXS0 654 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 A1CFQ9NQ94 594 aaKnown RBP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.25■□□□□ 0.03
PTCH1-218ENST00000548945 PCDHB15Q9Y5E8 787 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 LRRC37A2A6NM11 1700 aa15.25■□□□□ 0.03
PTCH1-218ENST00000548945 ARVCFO00192 962 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 CNTN2Q02246 1040 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 PPIGQ13427 754 aaKnown RBP eCLIP15.24■□□□□ 0.03
PTCH1-218ENST00000548945 RCSD1Q6JBY9 416 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 SEZ6LQ9BYH1 1024 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 HOMER2Q9NSB8 354 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 RNF146Q9NTX7 359 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 ANAPC4Q9UJX5 808 aa15.24■□□□□ 0.03
PTCH1-218ENST00000548945 LCTP09848 1927 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 CHD7Q9P2D1 2997 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TSPY2A6NKD2 308 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 CTAGE5O15320 804 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 FOXP2O15409 715 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TLR3O15455 904 aaKnown RBP15.23■□□□□ 0.03
PTCH1-218ENST00000548945 CABYRO75952 493 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 MCCP23508 829 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 NOVP48745 357 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TNFAIP2Q03169 654 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 IKQ13123 557 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 FAM126BQ8IXS8 530 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 OTUD7AQ8TE49 926 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-218ENST00000548945 MYLIPQ8WY64 445 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 VTI1AQ96AJ9 217 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 AGBL1Q96MI9 1066 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TRERF1Q96PN7 1200 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 ISY1Q9ULR0 285 aaKnown RBP15.23■□□□□ 0.03
PTCH1-218ENST00000548945 STX8Q9UNK0 236 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 TRANK1O15050 2925 aa15.23■□□□□ 0.03
PTCH1-218ENST00000548945 SALL3Q9BXA9 1300 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 FOSL2P15408 326 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 DNAJB2P25686 324 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 ALX1Q15699 326 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 CCDC129Q6ZRS4 1044 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 TMEM199Q8N511 208 aa15.22■□□□□ 0.03
PTCH1-218ENST00000548945 SLC43A3Q8NBI5 491 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms