RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ATP2C2O75185 946 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 PLCG1P19174 1290 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 CDK8P49336 464 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 UBXN2AP68543 259 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 FBXO38Q6PIJ6 1188 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 ARHGEF1Q92888 912 aaKnown RBP17.43■□□□□ 0.38
CUX1-211ENST00000546411 CASP7P55210 303 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 TTLL12Q14166 644 aaPredicted RBP17.43■□□□□ 0.38
CUX1-211ENST00000546411 KIAA0753Q2KHM9 967 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 HAUS3Q68CZ6 603 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 POLD4Q9HCU8 107 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 SAR1BQ9Y6B6 198 aa17.43■□□□□ 0.38
CUX1-211ENST00000546411 H0YIN7 160 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 KLHL30Q0D2K2 578 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SLC9C1Q4G0N8 1177 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 TOGARAM2Q6ZUX3 1019 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 MRPL44Q9H9J2 332 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 DDX25Q9UHL0 483 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 KIAA1024Q9UPX6 916 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 MROH7-TTC4A0A0A0MT08 1334 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 VAV2P52735 878 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 CERKLQ49MI3 558 aaPredicted RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 CCDC84Q86UT8 332 aaPredicted RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 MYCT1Q8N699 235 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SERPINB13Q9UIV8 391 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 RPS6KA4O75676 772 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 GDF11O95390 407 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 TRAPPC10P48553 1259 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SNAP25P60880 206 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SMC1AQ14683 1233 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 MYOCDQ8IZQ8 938 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SCLT1Q96NL6 688 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 TMEM47Q9BQJ4 181 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 NUP58Q9BVL2 599 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 TRIM31Q9BZY9 425 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 TCP10L2B9ZVM9 353 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 RPL13P26373 211 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 KRT31Q15323 416 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 LARGE2Q8N3Y3 721 aa17.42■□□□□ 0.38
CUX1-211ENST00000546411 SRBD1Q8N5C6 995 aaKnown RBP17.42■□□□□ 0.38
CUX1-211ENST00000546411 TLDC2A0PJX2 215 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 IFI16Q16666 785 aaKnown RBP17.41■□□□□ 0.38
CUX1-211ENST00000546411 KLHL7Q8IXQ5 586 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 TCHPQ9BT92 498 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 IRX2Q9BZI1 471 aaPredicted RBP17.41■□□□□ 0.38
CUX1-211ENST00000546411 EFCAB8A8MWE9 144 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 GPR161Q8N6U8 529 aaKnown RBP17.41■□□□□ 0.38
CUX1-211ENST00000546411 ATRIPQ8WXE1 791 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 RICTORQ6R327 1708 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 ABCC12Q96J65 1359 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 CAMTA2O94983 1202 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 HMGB2P26583 209 aaKnown RBP17.41■□□□□ 0.38
CUX1-211ENST00000546411 PPP1R2P41236 205 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 ICA1Q05084 483 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 MTF1Q14872 753 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 SLFN13Q68D06 897 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 SELENOOQ9BVL4 669 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 PRM3Q9NNZ6 103 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 NARFQ9UHQ1 456 aa17.41■□□□□ 0.38
CUX1-211ENST00000546411 PPIP5K2O43314 1243 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 EPB41P11171 864 aaKnown RBP17.4■□□□□ 0.38
CUX1-211ENST00000546411 KLRK1P26718 216 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 PABPC4Q13310 644 aaKnown RBP eCLIP17.4■□□□□ 0.38
CUX1-211ENST00000546411 TBC1D10BQ4KMP7 808 aaPredicted RBP17.4■□□□□ 0.38
CUX1-211ENST00000546411 C8orf74Q6P047 294 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 ENGASEQ8NFI3 743 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 CLRN2A0PK11 232 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 MEIS1O00470 390 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 MYCLP12524 364 aaPredicted RBP17.4■□□□□ 0.38
CUX1-211ENST00000546411 GRAPQ13588 217 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 KMT5BQ4FZB7 885 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 FAM26FQ5R3K3 315 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 NSMFQ6X4W1 530 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 GRAPLQ8TC17 118 aaPredicted RBP17.4■□□□□ 0.38
CUX1-211ENST00000546411 SMCR8Q8TEV9 937 aaPredicted RBP17.4■□□□□ 0.38
CUX1-211ENST00000546411 FMR1Q06787 632 aaKnown RBP eCLIP17.4■□□□□ 0.38
CUX1-211ENST00000546411 CERS3Q8IU89 383 aa17.4■□□□□ 0.38
CUX1-211ENST00000546411 POTEJP0CG39 1038 aa17.39■□□□□ 0.38
CUX1-211ENST00000546411 POLR2FP61218 127 aaKnown RBP17.39■□□□□ 0.38
CUX1-211ENST00000546411 PRKG1Q13976 671 aa17.39■□□□□ 0.38
CUX1-211ENST00000546411 ZNF658Q5TYW1 1059 aaPredicted RBP17.39■□□□□ 0.38
CUX1-211ENST00000546411 CCDC51Q96ER9 411 aa17.39■□□□□ 0.38
CUX1-211ENST00000546411 FUCA2Q9BTY2 467 aa17.39■□□□□ 0.38
CUX1-211ENST00000546411 LSM14BQ9BX40 385 aaKnown RBP17.39■□□□□ 0.38
CUX1-211ENST00000546411 SEPT7Q16181 437 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 SND1Q7KZF4 910 aaKnown RBP eCLIP17.39■□□□□ 0.37
CUX1-211ENST00000546411 TICAM2Q86XR7 235 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 CLEC10AQ8IUN9 316 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 WDR19Q8NEZ3 1342 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 LARP4BQ92615 738 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 GJA10Q969M2 543 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 FAM212AQ96EL1 285 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 PANK4Q9NVE7 773 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 CCDC169A6NNP5 214 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 HARSP12081 509 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 RDXP35241 583 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 MRPS25P82663 173 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 ARHGAP44Q17R89 818 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 DGKHQ86XP1 1220 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms