RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	SYDE2	Q5VT97	1194 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	CASC1	Q6TDU7	716 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	STOX1	Q6ZVD7	989 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	CYB5R4	Q7L1T6	521 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	PNMA1	Q8ND90	353 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	CHST13	Q8NET6	341 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	NCOA7	Q8NI08	942 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	DEFB118	Q96PH6	123 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	MMP19	Q99542	508 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	RANBP17	Q9H2T7	1088 aa	Known RBP	13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	KAT14	Q9H8E8	782 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	MTMR7	Q9Y216	660 aa		13.93	□□□□□ -0.18
YBX3-217	ENST00000546164	NECTIN1	Q15223	517 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	ZNF792	Q3KQV3	632 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	TTBK2	Q6IQ55	1244 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	UBE2Q1	Q7Z7E8	422 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	RALYL	Q86SE5	291 aa	Known RBP	13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	MAML3	Q96JK9	1138 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	ANO2	Q9NQ90	1003 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	PNMA2	Q9UL42	364 aa		13.92	□□□□□ -0.18
YBX3-217	ENST00000546164	DNAJC25-GNG10	A0A024R161	153 aa		13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	SLC16A2	P36021	539 aa		13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	FXR2	P51116	673 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	IFIT1B	Q5T764	474 aa	Known RBP	13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	CHMP4C	Q96CF2	233 aa		13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	MTA3	Q9BTC8	594 aa		13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	GPCPD1	Q9NPB8	672 aa		13.91	□□□□□ -0.18
YBX3-217	ENST00000546164	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	SLC27A2	O14975	620 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	ICAM1	P05362	532 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	CYBA	P13498	195 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	CYP2C19	P33261	490 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	ASPRV1	Q53RT3	343 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	CREB3L3	Q68CJ9	461 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	MSL3	Q8N5Y2	521 aa	Known RBP	13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	ANKLE1	Q8NAG6	615 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	AGBL1	Q96MI9	1066 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	ACAD9	Q9H845	621 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	RNF146	Q9NTX7	359 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	NRBP1	Q9UHY1	535 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	OGDHL	Q9ULD0	1010 aa		13.9	□□□□□ -0.18
YBX3-217	ENST00000546164	WDR19	Q8NEZ3	1342 aa		13.9	□□□□□ -0.19
YBX3-217	ENST00000546164	MSC	O60682	206 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	PGK2	P07205	417 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	CCND3	P30281	292 aa	Predicted RBP	13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	ANTXR2	P58335	489 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	SART3	Q15020	963 aa	Known RBP	13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	CCDC174	Q6PII3	467 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	DDX11	Q96FC9	970 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	TINF2	Q9BSI4	451 aa		13.89	□□□□□ -0.19
YBX3-217	ENST00000546164	ERICH2	A1L162	156 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	IFIT3	O14879	490 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	FARP2	O94887	1054 aa	Predicted RBP	13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	TFRC	P02786	760 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	PARP1	P09874	1014 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	GOLGA8H	P0CJ92	632 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	SLC4A3	P48751	1232 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	SNAP25	P60880	206 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	RNF20	Q5VTR2	975 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	LHX8	Q68G74	356 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	MAMDC4	Q6UXC1	1216 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	ANKRD35	Q8N283	1001 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	TRPV1	Q8NER1	839 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	IGDCC4	Q8TDY8	1250 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	TRERF1	Q96PN7	1200 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	A1CF	Q9NQ94	594 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	HOMER2	Q9NSB8	354 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	CCPG1	Q9ULG6	757 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	PFAS	O15067	1338 aa		13.88	□□□□□ -0.19
YBX3-217	ENST00000546164	ALAS1	P13196	640 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	MNX1	P50219	401 aa	Predicted RBP	13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	WTAP	Q15007	396 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	TSGA10IP	Q3SY00	556 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	FAM133A	Q8N9E0	248 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	FGD4	Q96M96	766 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	DDX20	Q9UHI6	824 aa	Known RBP	13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	SYNGAP1	Q96PV0	1343 aa		13.87	□□□□□ -0.19
YBX3-217	ENST00000546164	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	PALM3	A6NDB9	673 aa	Predicted RBP	13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	SEPT4	O43236	478 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	MCM5	P33992	734 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	TROAP	Q12815	778 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	GRM4	Q14833	912 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	MUM1L1	Q5H9M0	696 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	TMEM67	Q5HYA8	995 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	CHST3	Q7LGC8	479 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	TMEM87B	Q96K49	555 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	UBA5	Q9GZZ9	404 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	MAF1	Q9H063	256 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	SENP2	Q9HC62	589 aa		13.86	□□□□□ -0.19
YBX3-217	ENST00000546164	CEP290	O15078	2479 aa		13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	POTEB2	H3BUK9	544 aa		13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	EPB41L2	O43491	1005 aa	Known RBP	13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	PRC1	O43663	620 aa		13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	ATXN8OS	P0DMR3	200 aa		13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	CDC37	Q16543	378 aa	Predicted RBP	13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	ADGRF4	Q8IZF3	695 aa		13.85	□□□□□ -0.19
YBX3-217	ENST00000546164	TMTC2	Q8N394	836 aa		13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms