RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 UBA5Q9GZZ9 404 aa18.48■□□□□ 0.55
PRPF40A-212ENST00000545856 THSD7BQ9C0I4 1608 aa18.48■□□□□ 0.55
PRPF40A-212ENST00000545856 SLC35G1Q2M3R5 365 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 MCTP2Q6DN12 878 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 CCDC82Q8N4S0 544 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 FBXO18Q8NFZ0 1043 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 DDX11Q96FC9 970 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 PIGSQ96S52 555 aa18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 WDR33Q9C0J8 1336 aaKnown RBP18.47■□□□□ 0.55
PRPF40A-212ENST00000545856 ICAM1P05362 532 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 SYT1P21579 422 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 GNA11P29992 359 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 SLC16A2P36021 539 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 TKFCQ3LXA3 575 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 CMTR1Q8N1G2 835 aaKnown RBP18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 BICD2Q8TD16 824 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 KIFC2Q96AC6 838 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 PARK7Q99497 189 aaKnown RBP18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 BRMS1Q9HCU9 246 aa18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 CTDP1Q9Y5B0 961 aaPredicted RBP18.46■□□□□ 0.55
PRPF40A-212ENST00000545856 SPDYE16A6NNV3 312 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 FAM155AB1AL88 458 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 H3BQV1 296 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 VWA5AO00534 786 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 STX6O43752 255 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 GCLCP48506 637 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 SAFBQ15424 915 aaKnown RBP eCLIP18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 QRICH1Q2TAL8 776 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 TREML2Q5T2D2 321 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 IFFO2Q5TF58 517 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 GPAT2Q6NUI2 795 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 FBXO11Q86XK2 927 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 HOMER1Q86YM7 354 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 BRI3BPQ8WY22 251 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 CHMP5Q9NZZ3 219 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 ABCB11O95342 1321 aa18.45■□□□□ 0.54
PRPF40A-212ENST00000545856 ALDH1A1P00352 501 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 SLC4A3P48751 1232 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 DEFB115Q30KQ5 88 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 DAGLBQ8NCG7 672 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 ASCC2Q9H1I8 757 aaPredicted RBP18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 FBXO28Q9NVF7 368 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 MAP3K20Q9NYL2 800 aaKnown RBP18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 MYH15Q9Y2K3 1946 aa18.44■□□□□ 0.54
PRPF40A-212ENST00000545856 TM4SF4P48230 202 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 HERVK_113P62684 666 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 REPS2Q8NFH8 660 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 PHF20Q9BVI0 1012 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 TEX13BQ9BXU2 312 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 ZMYND12Q9H0C1 365 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 ZSCAN16Q9H4T2 348 aaPredicted RBP18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 VAT1LQ9HCJ6 419 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 C6orf50Q9HD87 102 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 MRPL11Q9Y3B7 192 aaKnown RBP18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 RABGAP1Q9Y3P9 1069 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 ATP6V1DQ9Y5K8 247 aa18.43■□□□□ 0.54
PRPF40A-212ENST00000545856 STXBP3O00186 592 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 MMP1P03956 469 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 NAPAP54920 295 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 GHRHRQ02643 423 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 WWC2Q6AWC2 1192 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 HEATR3Q7Z4Q2 680 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 FOXP1Q9H334 677 aaPredicted RBP18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 CPVLQ9H3G5 476 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 FOXD4L1Q9NU39 408 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 PCDHA1Q9Y5I3 950 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 BTBD19C9JJ37 291 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 PDHXO00330 501 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 BRD1O95696 1058 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 MAP2K2P36507 400 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 MRPL12P52815 198 aaKnown RBP18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 DGKZQ13574 1117 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 KRT40Q6A162 431 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 MCF2L2Q86YR7 1114 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 ATG4CQ96DT6 458 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 FBXO40Q9UH90 709 aa18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 ZNF214Q9UL59 606 aaPredicted RBP18.42■□□□□ 0.54
PRPF40A-212ENST00000545856 ZNF536O15090 1300 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 SLC25A27O95847 323 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 BRAPQ7Z569 592 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 SPRYD3Q8NCJ5 442 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 CUL5Q93034 780 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 CAPNS2Q96L46 248 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 CCPG1Q9ULG6 757 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 PCDHA4Q9UN74 947 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 MTMR6Q9Y217 621 aa18.41■□□□□ 0.54
PRPF40A-212ENST00000545856 PIK3CDO00329 1044 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 ZSCAN22P10073 491 aaPredicted RBP18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 NLRP5P59047 1200 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 CCNA1P78396 465 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 SHCBP1Q8NEM2 672 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 CHST13Q8NET6 341 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 SMCR8Q8TEV9 937 aaPredicted RBP18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 P2RX7Q99572 595 aaKnown RBP18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 RIC8AQ9NPQ8 531 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 VPS54Q9P1Q0 977 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 MORF4L1Q9UBU8 362 aa18.4■□□□□ 0.54
PRPF40A-212ENST00000545856 SMCHD1A6NHR9 2005 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms