RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 CTAGE5O15320 804 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 FIBPO43427 364 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 RANBP6O60518 1105 aaKnown RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 YEATS4O95619 227 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 FDPSP14324 419 aaKnown RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 SMARCA1P28370 1054 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 GSK3AP49840 483 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 PTK2Q05397 1052 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 DHX9Q08211 1270 aaKnown RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 RRP12Q5JTH9 1297 aaKnown RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 STRIP1Q5VSL9 837 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 TTC6Q86TZ1 520 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 MICU3Q86XE3 530 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 TEX11Q8IYF3 940 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 RTKN2Q8IZC4 609 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 VWA5B2Q8N398 1253 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 ENAHQ8N8S7 591 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 ADAM32Q8TC27 787 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 LEO1Q8WVC0 666 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 GZF1Q9H116 711 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 GRPEL1Q9HAV7 217 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 MKNK2Q9HBH9 465 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 NCOA5Q9HCD5 579 aaKnown RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 POLMQ9NP87 494 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-239ENST00000545694 RTEL1Q9NZ71 1219 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 TNKSO95271 1327 aa7.16□□□□□ -1.26
SYNE1-239ENST00000545694 A0A1W2PQ27 194 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 A0A1W2PQ64 194 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 A0A1W2PQD8 194 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 SLC35F4A4IF30 521 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 TSPY2A6NKD2 308 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 PRPF3O43395 683 aaKnown RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 BMP15O95972 392 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 POLR3DP05423 398 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 U2AF2P26368 475 aaKnown RBP eCLIP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 ADD1P35611 737 aaKnown RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 BTDP43251 543 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 NASPP49321 788 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 KCNMA1Q12791 1236 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 EZH2Q15910 746 aaKnown RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 UVSSAQ2YD98 709 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 C16orf86Q6ZW13 317 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 FERMT3Q86UX7 667 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF444Q8N0Y2 327 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 CRACR2BQ8N4Y2 399 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 CTCFLQ8NI51 663 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF622Q969S3 477 aaKnown RBP eCLIP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 ALG1Q9BT22 464 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 FAM117AQ9C073 453 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 FOXP1Q9H334 677 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 BRMS1Q9HCU9 246 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 TMEM63CQ9P1W3 806 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 SWAP70Q9UH65 585 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 CDV3Q9UKY7 258 aaKnown RBP7.15□□□□□ -1.26
SYNE1-239ENST00000545694 PLIN4Q96Q06 1357 aa7.15□□□□□ -1.26
SYNE1-239ENST00000545694 CDC14CA4D256 554 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 PPP6R2O75170 966 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 COL2A1P02458 1487 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TSPY3P0CV98 308 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TSPY8P0CW00 308 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 CDC27P30260 824 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 RHBDL3P58872 404 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TGFB2P61812 414 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 GTF2IP78347 998 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 KIF23Q02241 960 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 KIAA2012Q0VF49 1180 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TROAPQ12815 778 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 GNL2Q13823 731 aaKnown RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 RILPL1Q5EBL4 403 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 SH3D19Q5HYK7 790 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 ADALQ6DHV7 355 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 GALNT17Q6IS24 598 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TTLL6Q8N841 843 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 NEDD1Q8NHV4 660 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 SH3RF3Q8TEJ3 882 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TGFBRAP1Q8WUH2 860 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 C7orf43Q8WVR3 580 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 NANOS1Q8WY41 292 aaKnown RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 TEKT1Q969V4 418 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 ZDHHC15Q96MV8 337 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 PSMD1Q99460 953 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 EHD4Q9H223 541 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 DHX36Q9H2U1 1008 aaKnown RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 KDM4CQ9H3R0 1056 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 KAT14Q9H8E8 782 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 SH3GLB2Q9NR46 395 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 BAZ2BQ9UIF8 2168 aaKnown RBP7.14□□□□□ -1.27
SYNE1-239ENST00000545694 SERPINA10Q9UK55 444 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 CEP131Q9UPN4 1083 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 DAGLAQ9Y4D2 1042 aa7.14□□□□□ -1.27
SYNE1-239ENST00000545694 ZNF646O15015 1829 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 SNED1Q8TER0 1413 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 FLT1P17948 1338 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 USP17L3A6NCW0 530 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 USP17L4A6NCW7 530 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 hCG_1984214I3L0E3 225 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 GADD45BO75293 160 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-239ENST00000545694 MMP1P03956 469 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 HLA-DOAP06340 250 aa7.13□□□□□ -1.27
SYNE1-239ENST00000545694 CCDC192P0DO97 292 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms