RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SLC9A7Q96T83 725 aa18.75■□□□□ 0.59
CLSTN3-216ENST00000545663 MTUS1Q9ULD2 1270 aa18.75■□□□□ 0.59
CLSTN3-216ENST00000545663 PARP14Q460N5 1801 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 RBAK-RBAKDNI3L0D1 243 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 WDR46O15213 610 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 SLC4A3P48751 1232 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 NKX3-2P78367 333 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 PHOSPHO2Q8TCD6 241 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 DBNDD2Q9BQY9 259 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 KATNBL1Q9H079 304 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 ABHD16BQ9H3Z7 469 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 TRMT13Q9NUP7 481 aaKnown RBP18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 MYO15AQ9UKN7 3530 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 ZNF536O15090 1300 aa18.74■□□□□ 0.59
CLSTN3-216ENST00000545663 CYP2D6P10635 497 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 FOXK2Q01167 660 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 TMEM179Q6ZVK1 233 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 NOL8Q76FK4 1167 aaKnown RBP18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 MAGEB6Q8N7X4 407 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 MFSD14AQ96MC6 490 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 SUGCTQ9HAC7 445 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 LMCD1Q9NZU5 365 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 PPP1R9AQ9ULJ8 1098 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 SCN5AQ14524 2016 aa18.73■□□□□ 0.59
CLSTN3-216ENST00000545663 DCHS1Q96JQ0 3298 aa18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 KIF28PB7ZC32 967 aa18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 H3BQ06 376 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 IDH1O75874 414 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 PFKMP08237 780 aa18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 AKR1B1P15121 316 aa18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 FSCN1Q16658 493 aaKnown RBP18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 ARMCX2Q7L311 632 aa18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 ALDH8A1Q9H2A2 487 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-216ENST00000545663 WDR87Q6ZQQ6 2873 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 CABYRO75952 493 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 TNFAIP2Q03169 654 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 ICA1Q05084 483 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 TMEM63BQ5T3F8 832 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 SNRNP48Q6IEG0 339 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 ZNF467Q7Z7K2 595 aaPredicted RBP18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 CCDC144CPQ8IYA2 1237 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 DYNLL2Q96FJ2 89 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 ARHGEF10LQ9HCE6 1279 aa18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 DDX49Q9Y6V7 483 aaKnown RBP18.71■□□□□ 0.59
CLSTN3-216ENST00000545663 MCM3APO60318 1980 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 ACTN1P12814 892 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 COPB2P35606 906 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 ZP2Q05996 745 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 CCDC158Q5M9N0 1113 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 FAM83BQ5T0W9 1011 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 PPP1R13LQ8WUF5 828 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 FTOQ9C0B1 505 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 FAM86C1Q9NVL1 165 aa18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 GNEQ9Y223 722 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-216ENST00000545663 DYNC1LI2O43237 492 aaPredicted RBP18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 RAD21O60216 631 aa18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 GFRA3O60609 400 aa18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 TLK2Q86UE8 772 aa18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 RIOK1Q9BRS2 568 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 TEX13BQ9BXU2 312 aa18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 MCM9Q9NXL9 1143 aa18.69■□□□□ 0.58
CLSTN3-216ENST00000545663 EEF2P13639 858 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 PTPN5P54829 565 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 CNTN2Q02246 1040 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 TCF15Q12870 199 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 MTX1Q13505 466 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 NEK9Q8TD19 979 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 NUP88Q99567 741 aaPredicted RBP18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 SH2D4AQ9H788 454 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 HDAC5Q9UQL6 1122 aa18.68■□□□□ 0.58
CLSTN3-216ENST00000545663 C19orf67A6NJJ6 358 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 SMPD1P17405 629 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 IRS1P35568 1242 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 TNNI3KQ59H18 835 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 CPXCR1Q8N123 301 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 AP5M1Q9H0R1 490 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 ANTXR1Q9H6X2 564 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 PDGFCQ9NRA1 345 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 MUTYHQ9UIF7 546 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 FPGT-TNNI3KV9GXZ4 949 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 DMDP11532 3685 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 TNKSO95271 1327 aa18.67■□□□□ 0.58
CLSTN3-216ENST00000545663 ANKRD35Q8N283 1001 aa18.66■□□□□ 0.58
CLSTN3-216ENST00000545663 PTPRZ1P23471 2315 aaPredicted RBP18.66■□□□□ 0.58
CLSTN3-216ENST00000545663 PNMA6EA0A0J9YXQ4 647 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 IQCF3P0C7M6 154 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 CERS3Q8IU89 383 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 ZBED2Q9BTP6 218 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 SEZ6LQ9BYH1 1024 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 SMC4Q9NTJ3 1288 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 TLR7Q9NYK1 1049 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 NOB1Q9ULX3 412 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 TECTAO75443 2155 aa18.65■□□□□ 0.58
CLSTN3-216ENST00000545663 TET1Q8NFU7 2136 aa18.64■□□□□ 0.57
CLSTN3-216ENST00000545663 SUPT20HL2P0C7V6 817 aa18.64■□□□□ 0.57
CLSTN3-216ENST00000545663 ERVK-21P61565 698 aa18.64■□□□□ 0.57
CLSTN3-216ENST00000545663 DEFB103AP81534 67 aa18.64■□□□□ 0.57
CLSTN3-216ENST00000545663 PUS10Q3MIT2 529 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-216ENST00000545663 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms