RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FERMT2Q96AC1 680 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 TUBGCP2Q9BSJ2 902 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 ARHGEF28Q8N1W1 1705 aaKnown RBP15.74■□□□□ 0.11
LIMS1-215ENST00000544547 NCAPHQ15003 741 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 NHEJ1Q9H9Q4 299 aaPredicted RBP15.74■□□□□ 0.11
LIMS1-215ENST00000544547 SERPINA10Q9UK55 444 aa15.74■□□□□ 0.11
LIMS1-215ENST00000544547 NOVA2Q9UNW9 492 aaKnown RBP15.74■□□□□ 0.11
LIMS1-215ENST00000544547 EIF3HO15372 352 aaKnown RBP eCLIP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 CTNND1O60716 968 aaKnown RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 FTCDO95954 541 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 KRT14P02533 472 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 CUL5Q93034 780 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 SPDL1Q96EA4 605 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 STIM2Q9P246 746 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 VIRMAQ69YN4 1812 aaKnown RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 RBBP5Q15291 538 aaKnown RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 ANKRD42Q8N9B4 389 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 SMCR8Q8TEV9 937 aaPredicted RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 YIPF3Q9GZM5 350 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 RPN1P04843 607 aaKnown RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 POTEJP0CG39 1038 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 SCP2P22307 547 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 LETM2Q2VYF4 491 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 NBPF5PQ86XG9 351 aaPredicted RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 LRRC1Q9BTT6 524 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 UTP11Q9Y3A2 253 aaKnown RBP15.73■□□□□ 0.11
LIMS1-215ENST00000544547 MROH7-TTC4A0A0A0MT08 1334 aa15.73■□□□□ 0.11
LIMS1-215ENST00000544547 INTS8Q75QN2 995 aaKnown RBP15.72■□□□□ 0.11
LIMS1-215ENST00000544547 PLEKHG2Q9H7P9 1386 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 ALS2CLQ60I27 953 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 GDAQ9Y2T3 454 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 FDPSP14324 419 aaKnown RBP15.72■□□□□ 0.11
LIMS1-215ENST00000544547 BRD2P25440 801 aaKnown RBP15.72■□□□□ 0.11
LIMS1-215ENST00000544547 PAGE5Q96GU1 130 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 UIMC1Q96RL1 719 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 SMARCAL1Q9NZC9 954 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 TTC26A0AVF1 554 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 CCDC160A6NGH7 325 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 CCDC152Q4G0S7 254 aa15.72■□□□□ 0.11
LIMS1-215ENST00000544547 TPX2Q9ULW0 747 aaKnown RBP15.72■□□□□ 0.11
LIMS1-215ENST00000544547 DIP2CQ9Y2E4 1556 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 SMIM24O75264 130 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 IL2RBP14784 551 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 MXRA7P84157 204 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 GRIPAP1Q4V328 841 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 CCDC197Q8NCU1 140 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 TRIM49BA6NDI0 452 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 RFC4P35249 363 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 SETDB1Q15047 1291 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 NFRKBQ6P4R8 1299 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 EMBQ6PCB8 327 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 NLRP14Q86W24 1093 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 ZNF654Q8IZM8 581 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 MLXIPQ9HAP2 919 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 ENO4A6NNW6 628 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 NCK2O43639 380 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 DESP17661 470 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 SESN3P58005 492 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 KLHL30Q0D2K2 578 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 USP49Q70CQ1 688 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 KAZALD1Q96I82 304 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 FAM167BQ9BTA0 163 aa15.71■□□□□ 0.11
LIMS1-215ENST00000544547 RGS16O15492 202 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 DZIP3Q86Y13 1208 aaKnown RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 PARP9Q8IXQ6 854 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 MRRFQ96E11 262 aaKnown RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 CRNKL1Q9BZJ0 848 aaKnown RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TUBE1Q9UJT0 475 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 HIP1RO75146 1068 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 CCNI2Q6ZMN8 369 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 KRT26Q7Z3Y9 468 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 FANCBQ8NB91 859 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TBC1D7Q9P0N9 293 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 RASAL2Q9UJF2 1139 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 USP42Q9H9J4 1324 aaKnown RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 NRKQ7Z2Y5 1582 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 A0A0U1RQJ8 604 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 KRIT1O00522 736 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 ZBTB16Q05516 673 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TSGA10IPQ3SY00 556 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 ACSBG1Q96GR2 724 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 ALDH8A1Q9H2A2 487 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 HAUS2Q9NVX0 235 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 MTRF1LQ9UGC7 380 aaKnown RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 PLAAQ9Y263 795 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 GTPBP6O43824 516 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TCIRG1Q13488 830 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TCP11X2Q5H9J9 407 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 RASGRP2Q7LDG7 609 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 HOOK3Q86VS8 718 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 TRIM7Q9C029 511 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 ACTR5Q9H9F9 607 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-215ENST00000544547 FRMPD1Q5SYB0 1578 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 USP32Q8NFA0 1604 aa15.7■□□□□ 0.1
LIMS1-215ENST00000544547 ERBB3P21860 1342 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 PTPREP23469 700 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 CNPY4Q8N129 248 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 LMBR1Q8WVP7 490 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 CEP170BQ9Y4F5 1589 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms