RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	WDR33	Q9C0J8	1336 aa	Known RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	THSD7B	Q9C0I4	1608 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	PNMA6F	A0A0J9YX94	578 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	TESPA1	A2RU30	521 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	CYTH3	O43739	400 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	SCG2	P13521	617 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	HSPA6	P17066	643 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	PDC	P20941	246 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	KIF23	Q02241	960 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	MOGS	Q13724	837 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	TAF1C	Q15572	869 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	QRICH1	Q2TAL8	776 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	GPAT2	Q6NUI2	795 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	HEATR3	Q7Z4Q2	680 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	FBXO11	Q86XK2	927 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	MB21D1	Q8N884	522 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	CCDC148	Q8NFR7	591 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	ATG4C	Q96DT6	458 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	ALG1	Q9BT22	464 aa		13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	RANBP17	Q9H2T7	1088 aa	Known RBP	13.73	□□□□□ -0.21
DDB1-223	ENST00000543658	hCG_1642624	A0A1W2PR95	340 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658		H3BQV1	296 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	VWA5A	O00534	786 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	ALDH1A1	P00352	501 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	FOSB	P53539	338 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	SNAP25	P60880	206 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	HERVK_113	P62684	666 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	FUT2	Q10981	343 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	PLS1	Q14651	629 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	PFKFB3	Q16875	520 aa	Predicted RBP	13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	USH1G	Q495M9	461 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	IFFO2	Q5TF58	517 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	IFNL1	Q8IU54	200 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	CPXCR1	Q8N123	301 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	C8orf76	Q96K31	380 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	PAGR1	Q9BTK6	254 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	AMN	Q9BXJ7	453 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	MYH15	Q9Y2K3	1946 aa		13.72	□□□□□ -0.21
DDB1-223	ENST00000543658	SMCHD1	A6NHR9	2005 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	AOC2	O75106	756 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	NAPA	P54920	295 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	FAM43A	Q8N2R8	423 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	MTMR8	Q96EF0	704 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	P2RX7	Q99572	595 aa	Known RBP	13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	SLC38A10	Q9HBR0	1119 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	BRMS1	Q9HCU9	246 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	CCPG1	Q9ULG6	757 aa		13.71	□□□□□ -0.21
DDB1-223	ENST00000543658	PLXNB2	O15031	1838 aa		13.71	□□□□□ -0.22
DDB1-223	ENST00000543658	ABCB11	O95342	1321 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	DTNB	O60941	627 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	ICAM1	P05362	532 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	PDIA4	P13667	645 aa	Known RBP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	MAP2K2	P36507	400 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	GCLC	P48506	637 aa	Predicted RBP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	OAZ1	P54368	228 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	HTRA3	P83110	453 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	GNL2	Q13823	731 aa	Known RBP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	LARP1B	Q659C4	914 aa	Known RBP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	WWC2	Q6AWC2	1192 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	PPP1R18	Q6NYC8	613 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	LBX2	Q6XYB7	198 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	ZFYVE28	Q9HCC9	887 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	RAVER2	Q9HCJ3	691 aa	Known RBP	13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	SH3GLB2	Q9NR46	395 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	PCDHA1	Q9Y5I3	950 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	MGAM	O43451	1857 aa		13.7	□□□□□ -0.22
DDB1-223	ENST00000543658	VPS37C	A5D8V6	355 aa	Predicted RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	CYP2C8	P10632	490 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	ALAS1	P13196	640 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	FDPS	P14324	419 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	CALML3	P27482	149 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	COPB2	P35606	906 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	TM4SF4	P48230	202 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	VEGFB	P49765	207 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	NLRP5	P59047	1200 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	CCNA1	P78396	465 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	SAFB	Q15424	915 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	PKN1	Q16512	942 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	SLC35G1	Q2M3R5	365 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	SNRNP48	Q6IEG0	339 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	CCAR1	Q8IX12	1150 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	FAM177A1	Q8N128	213 aa	Predicted RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	COA7	Q96BR5	231 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	PTPN18	Q99952	460 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	TEX13B	Q9BXU2	312 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	BARHL2	Q9NY43	387 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	VPS54	Q9P1Q0	977 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	MRPL11	Q9Y3B7	192 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	RABGAP1	Q9Y3P9	1069 aa		13.69	□□□□□ -0.22
DDB1-223	ENST00000543658	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	STXBP3	O00186	592 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	GNA11	P29992	359 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	STAT3	P40763	770 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	ADCY7	P51828	1080 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	TKFC	Q3LXA3	575 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	BICD2	Q8TD16	824 aa		13.68	□□□□□ -0.22
DDB1-223	ENST00000543658	CUL5	Q93034	780 aa		13.68	□□□□□ -0.22

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