RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 COA7Q96BR5 231 aa20.33■□□□□ 0.85
CLIP1-215ENST00000541108 POTEIP0CG38 1075 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 POTEJP0CG39 1038 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 TOB1P50616 345 aaPredicted RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 CEBPZQ03701 1054 aaKnown RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 TEX2Q8IWB9 1127 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 PRPF38AQ8NAV1 312 aaKnown RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 KCNG4Q8TDN1 519 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 ANP32EQ9BTT0 268 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 NOL7Q9UMY1 257 aaKnown RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 PCDHA1Q9Y5I3 950 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 CLIC4Q9Y696 253 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 VCAM1P19320 739 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 PPATQ06203 517 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 SLC39A14Q15043 492 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 SH3D19Q5HYK7 790 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 FBXO11Q86XK2 927 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 FTOQ9C0B1 505 aaKnown RBP eCLIP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 RANBP17Q9H2T7 1088 aaKnown RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 RIC8AQ9NPQ8 531 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.32■□□□□ 0.84
CLIP1-215ENST00000541108 PCDHA6Q9UN73 950 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 PCDHA8Q9Y5H6 950 aa20.32■□□□□ 0.84
CLIP1-215ENST00000541108 TRIM75PA6NK02 468 aa20.31■□□□□ 0.84
CLIP1-215ENST00000541108 GADD45BO75293 160 aaPredicted RBP20.31■□□□□ 0.84
CLIP1-215ENST00000541108 FDX1P10109 184 aa20.31■□□□□ 0.84
CLIP1-215ENST00000541108 MRPL12P52815 198 aaKnown RBP20.31■□□□□ 0.84
CLIP1-215ENST00000541108 STK38Q15208 465 aa20.31■□□□□ 0.84
CLIP1-215ENST00000541108 SF3A1Q15459 793 aaKnown RBP20.31■□□□□ 0.84
CLIP1-215ENST00000541108 MAP1SQ66K74 1059 aaPredicted RBP20.31■□□□□ 0.84
CLIP1-215ENST00000541108 ERO1BQ86YB8 467 aa20.31■□□□□ 0.84
CLIP1-215ENST00000541108 CCDC194A0A1B0GVG4 234 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 GOLGA6L4A6NEF3 574 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 ADCY7P51828 1080 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 TTLL12Q14166 644 aaPredicted RBP20.3■□□□□ 0.84
CLIP1-215ENST00000541108 EARS2Q5JPH6 523 aaKnown RBP20.3■□□□□ 0.84
CLIP1-215ENST00000541108 KRT25Q7Z3Z0 450 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 REXO1Q8N1G1 1221 aaKnown RBP20.3■□□□□ 0.84
CLIP1-215ENST00000541108 KIFC2Q96AC6 838 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 SLF1Q9BQI6 1058 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 CEP131Q9UPN4 1083 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 MORC2Q9Y6X9 1032 aaPredicted RBP20.3■□□□□ 0.84
CLIP1-215ENST00000541108 OTOFQ9HC10 1997 aa20.3■□□□□ 0.84
CLIP1-215ENST00000541108 SPTLC2O15270 562 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 PPP6R2O75170 966 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 PTPAQ15257 358 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 LDLRAD1Q5T700 205 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 PIK3AP1Q6ZUJ8 805 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 GPT2Q8TD30 523 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 CUL5Q93034 780 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 TMOD4Q9NZQ9 345 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 BMP15O95972 392 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 HMGCS2P54868 508 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 FKBP1BP68106 108 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 JMYQ8N9B5 988 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 RPAP3Q9H6T3 665 aaPredicted RBP20.29■□□□□ 0.84
CLIP1-215ENST00000541108 PSTPIP2Q9H939 334 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 PNMA2Q9UL42 364 aa20.29■□□□□ 0.84
CLIP1-215ENST00000541108 SPDYE5A6NIY4 337 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 ADAMTS3O15072 1205 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 ADALQ6DHV7 355 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 MCTP2Q6DN12 878 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 PGBD1Q96JS3 809 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 TANGO6Q9C0B7 1094 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 FBXO28Q9NVF7 368 aa20.28■□□□□ 0.84
CLIP1-215ENST00000541108 CXCL11O14625 94 aa20.27■□□□□ 0.84
CLIP1-215ENST00000541108 ME1P48163 572 aa20.27■□□□□ 0.84
CLIP1-215ENST00000541108 CLK2P49760 499 aaKnown RBP20.27■□□□□ 0.84
CLIP1-215ENST00000541108 NMRK2Q9NPI5 230 aa20.27■□□□□ 0.84
CLIP1-215ENST00000541108 PPP1R9AQ9ULJ8 1098 aa20.27■□□□□ 0.84
CLIP1-215ENST00000541108 PCDHB6Q9Y5E3 794 aa20.27■□□□□ 0.84
CLIP1-215ENST00000541108 FAM205CA6NFA0 338 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 FLOT1O75955 427 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 DGKZQ13574 1117 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 NONOQ15233 471 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLIP1-215ENST00000541108 RASGRP4Q8TDF6 673 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 ELP3Q9H9T3 547 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 PCDHA7Q9UN72 937 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 SNAP25P60880 206 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 PPIL2Q13356 520 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 NOM1Q5C9Z4 860 aaKnown RBP20.26■□□□□ 0.83
CLIP1-215ENST00000541108 TTC38Q5R3I4 469 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 MOB2Q70IA6 237 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 SLC38A10Q9HBR0 1119 aa20.26■□□□□ 0.83
CLIP1-215ENST00000541108 BIN2Q9UBW5 565 aaPredicted RBP20.26■□□□□ 0.83
CLIP1-215ENST00000541108 A0A1W2PQ27 194 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 A0A1W2PQ64 194 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 A0A1W2PQD8 194 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 TRAF5O00463 557 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 IRF6O14896 467 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 ICAM1P05362 532 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 COG2Q14746 738 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 USH1GQ495M9 461 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 CATSPERGQ6ZRH7 1159 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 PROCA1Q8NCQ7 364 aaPredicted RBP20.25■□□□□ 0.83
CLIP1-215ENST00000541108 CLMNQ96JQ2 1002 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 KCNH4Q9UQ05 1017 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 MYPNQ86TC9 1320 aa20.25■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L15C9J2P7 530 aa20.24■□□□□ 0.83
CLIP1-215ENST00000541108 USP17L13C9JLJ4 530 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms