RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ABCC12Q96J65 1359 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 ATP6V1G2O95670 118 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 PAPOLAP51003 745 aaKnown RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 GUCY1A3Q02108 690 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 USP4Q13107 963 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 PTGISQ16647 500 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 LRRC24Q50LG9 513 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 NLRP14Q86W24 1093 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 AENQ8WTP8 325 aaKnown RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 EPAS1Q99814 870 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 TSGA10Q9BZW7 698 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 NOD2Q9HC29 1040 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 SEC31BQ9NQW1 1179 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 C15orf41Q9Y2V0 281 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 PCDHGA4Q9Y5G9 962 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 C4AP0C0L4 1744 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 CARMIL3Q8ND23 1372 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 AKR1B15C9JRZ8 316 aaPredicted RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 CDKL5O76039 1030 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 SETSIPP0DME0 302 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 IMPDH2P12268 514 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 ABCD1P33897 745 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 SEC24CP53992 1094 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 XRCC4Q13426 336 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 SH2D3CQ8N5H7 860 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 TBC1D5Q92609 795 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 RRP36Q96EU6 259 aaKnown RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 RNPC3Q96LT9 517 aaKnown RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 MMS19Q96T76 1030 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 OSBPL7Q9BZF2 842 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 RGL1Q9NZL6 768 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 HOOK1Q9UJC3 728 aaKnown RBP10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 TUBE1Q9UJT0 475 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 FAM184BQ9ULE4 1060 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 SCN7AQ01118 1682 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 POLRMTO00411 1230 aaKnown RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 LINGO3P0C6S8 592 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 SF3A1Q15459 793 aaKnown RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 ANKRD20A8PQ5CZ79 823 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 SPECC1Q5M775 1068 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 PRR5LQ6MZQ0 368 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 Q6ZUG5 572 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 SND1Q7KZF4 910 aaKnown RBP eCLIP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 CNBD1Q8NA66 436 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 CUL5Q93034 780 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 PPP1R37O75864 691 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 CCDC96Q2M329 555 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 CCDC152Q4G0S7 254 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 DNAJC14Q6Y2X3 702 aaPredicted RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 ATG9AQ7Z3C6 839 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 ACRBPQ8NEB7 543 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 NLRP3Q96P20 1036 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 NAA15Q9BXJ9 866 aaKnown RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 PAPOLBQ9NRJ5 636 aaKnown RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 BAIAP2L1Q9UHR4 511 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 ANAPC4Q9UJX5 808 aa10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 TTF2Q9UNY4 1162 aaKnown RBP10.56□□□□□ -0.72
CTNNA1-243ENST00000540387 EYA2O00167 538 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 GLRX3O76003 335 aaKnown RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 FAM107AO95990 144 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 MMP10P09238 476 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ROR2Q01974 943 aaKnown RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 GUCY1B3Q02153 619 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 TFCP2Q12800 502 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 STK38Q15208 465 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 SF3B3Q15393 1217 aaKnown RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 KCTD16Q68DU8 428 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 OLFM4Q6UX06 510 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 TRAPPC11Q7Z392 1133 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 LINC00301Q8NCQ3 95 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ZNF570Q96NI8 536 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 MYO1AQ9UBC5 1043 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 RGPD3A6NKT7 1758 aaPredicted RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 RGPD4Q7Z3J3 1758 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 KIF4AO95239 1232 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ANP32DO95626 131 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 FERP16591 822 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 SCTRP47872 440 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ELF3P78545 371 aaPredicted RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 LDHAL6AQ6ZMR3 332 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 KDM7AQ6ZMT4 941 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 RBM12BQ8IXT5 1001 aaKnown RBP10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 PLEKHG4BQ96PX9 1271 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ALS2CR12Q96Q35 445 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 KDM4CQ9H3R0 1056 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 BLOC1S6Q9UL45 172 aa10.55□□□□□ -0.72
CTNNA1-243ENST00000540387 ZSCAN9O15535 394 aaPredicted RBP10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 GNAT1P11488 350 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 PFKFB1P16118 471 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 GCLCP48506 637 aaPredicted RBP10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 CLASRPQ8N2M8 674 aaKnown RBP10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 FAM81AQ8TBF8 368 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 EAF2Q96CJ1 260 aaPredicted RBP10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 FAM227BQ96M60 508 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 RUFY1Q96T51 708 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 HDAC6Q9UBN7 1215 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 CLIC4Q9Y696 253 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 PDE4BQ07343 736 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 NNTQ13423 1086 aa10.54□□□□□ -0.72
CTNNA1-243ENST00000540387 SLMAPQ14BN4 828 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms