RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 NOC4LQ9BVI4 516 aaKnown RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 CCDC94Q9BW85 323 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 RTFDC1Q9BY42 306 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 DHX36Q9H2U1 1008 aaKnown RBP12.08□□□□□ -0.48
CLIP1-213ENST00000540338 PCDHA6Q9UN73 950 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 PCDHA8Q9Y5H6 950 aa12.08□□□□□ -0.48
CLIP1-213ENST00000540338 PHLPP1O60346 1717 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 COPB1P53618 953 aaKnown RBP12.07□□□□□ -0.48
CLIP1-213ENST00000540338 SLFN13Q68D06 897 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 DYMQ7RTS9 669 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 POLLQ9UGP5 575 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 USO1O60763 962 aaKnown RBP12.07□□□□□ -0.48
CLIP1-213ENST00000540338 TM4SF1P30408 202 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 FMR1Q06787 632 aaKnown RBP eCLIP12.07□□□□□ -0.484e-6■■■■□ 21.6
CLIP1-213ENST00000540338 NCAPHQ15003 741 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 FEZ1Q99689 392 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 ZNF215Q9UL58 517 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-213ENST00000540338 USP27XA6NNY8 438 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 PPIP5K2O43314 1243 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 ERLIN1O75477 346 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 IL1R1P14778 569 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 ZNF569Q5MCW4 686 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 ZNF772Q68DY9 489 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-213ENST00000540338 VEZTQ9HBM0 779 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 STRCQ7RTU9 1775 aa12.07□□□□□ -0.48
CLIP1-213ENST00000540338 SPDYE4A6NLX3 237 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 CLSTN1O94985 981 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 KRT83P78385 493 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 ZNF771Q7L3S4 317 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 CCDC65Q8IXS2 484 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 MMRN2Q9H8L6 949 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 KANSL2Q9H9L4 492 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 MAD2L2Q9UI95 211 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 TUBGCP6Q96RT7 1819 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PNMA6FA0A0J9YX94 578 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 SLC16A2P36021 539 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 ICA1Q05084 483 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 KCTD1Q719H9 257 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 FOXP4Q8IVH2 680 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 GOLGA6L1Q8N7Z2 621 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 IL17RBQ9NRM6 502 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PI4KBQ9UBF8 816 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PCDHA12Q9UN75 941 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 CTAGE9A4FU28 777 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PLCG1P19174 1290 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 DPYDQ12882 1025 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 EARS2Q5JPH6 523 aaKnown RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 C15orf52Q6ZUT6 534 aaKnown RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 DESI2Q9BSY9 194 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 ZSWIM4Q9H7M6 989 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PCDHA1Q9Y5I3 950 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 UBR2Q8IWV8 1755 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 AKR1B1P15121 316 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 CRKP46108 304 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 EHBP1Q8NDI1 1231 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 DHTKD1Q96HY7 919 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 NUP58Q9BVL2 599 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 ARHGEF10LQ9HCE6 1279 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 MTMR4Q9NYA4 1195 aa12.06□□□□□ -0.48
CLIP1-213ENST00000540338 DDX25Q9UHL0 483 aaKnown RBP12.06□□□□□ -0.48
CLIP1-213ENST00000540338 PALM3A6NDB9 673 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-213ENST00000540338 STXBP3O00186 592 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 RBL2Q08999 1139 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 ANKS1AQ92625 1134 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 ACBD3Q9H3P7 528 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 LRRC4BQ9NT99 713 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 CASP14P31944 242 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 TNIP1Q15025 636 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 KMT5BQ4FZB7 885 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 NUP188Q5SRE5 1749 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 BCL9LQ86UU0 1499 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 NT5C3AQ9H0P0 336 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 GDAQ9Y2T3 454 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 AKR1B10O60218 316 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 TBCAO75347 108 aaKnown RBP12.05□□□□□ -0.48
CLIP1-213ENST00000540338 DNM2P50570 870 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 TDRD12Q587J7 1177 aaKnown RBP12.05□□□□□ -0.48
CLIP1-213ENST00000540338 HAUS3Q68CZ6 603 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 RCSD1Q6JBY9 416 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 OR8K1Q8NGG5 319 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 CARD6Q9BX69 1037 aa12.05□□□□□ -0.48
CLIP1-213ENST00000540338 NID2Q14112 1375 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 PRPHP41219 470 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 KCNJ6P48051 423 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 FUT2Q10981 343 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 BMS1Q14692 1282 aaKnown RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 ELF2Q15723 593 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 ABCB5Q2M3G0 1257 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 LARGE2Q8N3Y3 721 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 CCDC42Q96M95 316 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 PODXL2Q9NZ53 605 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 PP2D1A8MPX8 630 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 PPP1R12BO60237 982 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 EEF1GP26641 437 aaKnown RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 SMARCA1P28370 1054 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 HOXA10P31260 410 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-213ENST00000540338 MCTP2Q6DN12 878 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 ZNF384Q8TF68 577 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 CCSER1Q9C0I3 900 aa12.04□□□□□ -0.48
CLIP1-213ENST00000540338 GUCA1BQ9UMX6 200 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms