RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PLCD1P51178 756 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 RNASE9P60153 205 aaKnown RBP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 AKT1S1Q96B36 256 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 RTFDC1Q9BY42 306 aaPredicted RBP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 USP40Q9NVE5 1235 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 ETF1P62495 437 aaKnown RBP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 GOLGA8FQ08AF8 430 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 GOLGA8DPQ0D2H9 430 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 CLIC6Q96NY7 704 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 PYM1Q9BRP8 204 aaKnown RBP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 FOXP1Q9H334 677 aaPredicted RBP11.19□□□□□ -0.62
TRAF1-202ENST00000540010 IMPACTQ9P2X3 320 aa11.19□□□□□ -0.62
TRAF1-202ENST00000540010 EBAG9O00559 213 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 PRPF3O43395 683 aaKnown RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 KRT83P78385 493 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 ARID5BQ14865 1188 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 C11orf57Q6ZUT1 292 aaPredicted RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 TMTC3Q6ZXV5 915 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 HDXQ7Z353 690 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 FANCLQ9NW38 375 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 CTNND2Q9UQB3 1225 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 OAS2P29728 719 aaKnown RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 TROAPQ12815 778 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 KIAA0825Q8IV33 1275 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 TEKT1Q969V4 418 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 EEF2KMTQ96G04 330 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 HINFPQ9BQA5 517 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 MXD3Q9BW11 206 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 LY75O60449 1722 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 GPR75-ASB3A0A0A6YYF3 556 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 HLA-DOAP06340 250 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 CMA1P23946 247 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 CDK8P49336 464 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 TBC1D8BQ0IIM8 1120 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 EZH2Q15910 746 aaKnown RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 OXER1Q8TDS5 423 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 SLF1Q9BQI6 1058 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 CHRNA5P30532 468 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 NAPAP54920 295 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 NAA30Q147X3 362 aaPredicted RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 DGKHQ86XP1 1220 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 DAGLAQ9Y4D2 1042 aa11.18□□□□□ -0.62
TRAF1-202ENST00000540010 TNRC6CQ9HCJ0 1690 aaKnown RBP11.18□□□□□ -0.62
TRAF1-202ENST00000540010 CUTAO60888 179 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 GTF2A1P52655 376 aaPredicted RBP11.17□□□□□ -0.62
TRAF1-202ENST00000540010 DPCR1Q3MIW9 517 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 DTHD1Q6ZMT9 781 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 NEK11Q8NG66 645 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 CNKSR1Q969H4 720 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 TAB2Q9NYJ8 693 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 FLT1P17948 1338 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 GOLGA6L10A0A0M3HER8 536 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 SCG2P13521 617 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 EIF6P56537 245 aaKnown RBP11.17□□□□□ -0.62
TRAF1-202ENST00000540010 POSTNQ15063 836 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 MICALCLQ6ZW33 695 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 MRFAP1L1Q96HT8 127 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 SERTAD1Q9UHV2 236 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 TAF1LQ8IZX4 1826 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 PPP6R2O75170 966 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 GOLGA8HP0CJ92 632 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 PIK3AP1Q6ZUJ8 805 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 NBPF11Q86T75 865 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 SRBD1Q8N5C6 995 aaKnown RBP11.17□□□□□ -0.62
TRAF1-202ENST00000540010 FUCA2Q9BTY2 467 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 RASSF4Q9H2L5 321 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 SBF2Q86WG5 1849 aa11.17□□□□□ -0.62
TRAF1-202ENST00000540010 MLKLQ8NB16 471 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 COL24A1Q17RW2 1714 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 SMC1AQ14683 1233 aaKnown RBP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 SPECC1LQ69YQ0 1117 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 FMR1NBQ8N0W7 255 aaPredicted RBP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 NAPGQ99747 312 aaPredicted RBP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 BLZF1Q9H2G9 400 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 PLEKHA4Q9H4M7 779 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.16□□□□□ -0.625e-14■■■■■ 211.5
TRAF1-202ENST00000540010 C4AP0C0L4 1744 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 IRS2Q9Y4H2 1338 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 DOCK2Q92608 1830 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 FGRP09769 529 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 PARP1P09874 1014 aaKnown RBP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 TCP10Q12799 353 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 SLC15A2Q16348 729 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 GPKOWQ92917 476 aaPredicted RBP eCLIP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 PCDHB6Q9Y5E3 794 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 TLDC2A0PJX2 215 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 KLRG2A4D1S0 409 aaPredicted RBP11.16□□□□□ -0.62
TRAF1-202ENST00000540010 CALML3P27482 149 aa11.16□□□□□ -0.62
TRAF1-202ENST00000540010 LETM2Q2VYF4 491 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 TMEM47Q9BQJ4 181 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 BAZ2AQ9UIF9 1905 aaKnown RBP11.15□□□□□ -0.62
TRAF1-202ENST00000540010 RASA1P20936 1047 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 BAG6P46379 1132 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 RGS22Q8NE09 1264 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 PCDHA5Q9Y5H7 936 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 FAM205AQ6ZU69 1335 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 SYNRGQ9UMZ2 1314 aa11.15□□□□□ -0.62
TRAF1-202ENST00000540010 SMIM23A6NLE4 172 aa11.15□□□□□ -0.63
TRAF1-202ENST00000540010 VAV2P52735 878 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms