RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 M0R2C6 588 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 PRDM1O75626 825 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 TIMP1P01033 207 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 LRRFIP1Q32MZ4 808 aaKnown RBP16.18■□□□□ 0.18
SS18-204ENST00000539244 IFNL3Q8IZI9 196 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 ANKRD35Q8N283 1001 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 NEDD1Q8NHV4 660 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 KATNBL1Q9H079 304 aa16.18■□□□□ 0.18
SS18-204ENST00000539244 CTDP1Q9Y5B0 961 aaPredicted RBP16.18■□□□□ 0.18
SS18-204ENST00000539244 SPTBN5Q9NRC6 3674 aaKnown RBP16.17■□□□□ 0.18
SS18-204ENST00000539244 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.17■□□□□ 0.18
SS18-204ENST00000539244 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.17■□□□□ 0.18
SS18-204ENST00000539244 ASGR1P07306 291 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 BMP3P12645 472 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 CCDC144BQ3MJ40 725 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 TSHZ3Q63HK5 1081 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 MFSD5Q6N075 450 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 ARMCX2Q7L311 632 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 LRRC47Q8N1G4 583 aaKnown RBP16.17■□□□□ 0.18
SS18-204ENST00000539244 SPC25Q9HBM1 224 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 TTC41PQ6P2S7 1318 aa16.17■□□□□ 0.18
SS18-204ENST00000539244 APPP05067 770 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 C6orf222P0C671 652 aaPredicted RBP16.16■□□□□ 0.18
SS18-204ENST00000539244 FOSL2P15408 326 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 PDE4BQ07343 736 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 SLFN13Q68D06 897 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 FAM133AQ8N9E0 248 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 NACAP1Q9BZK3 213 aa16.16■□□□□ 0.18
SS18-204ENST00000539244 A0A0U1RQG5 324 aaPredicted RBP16.15■□□□□ 0.18
SS18-204ENST00000539244 ARVCFO00192 962 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 CTAGE5O15320 804 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 PLA2G6O60733 806 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 TSPY3P0CV98 308 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 TSPY8P0CW00 308 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 DNAJB2P25686 324 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 SLC4A3P48751 1232 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 STAT2P52630 851 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 IRX5P78411 483 aaPredicted RBP16.15■□□□□ 0.18
SS18-204ENST00000539244 RASIP1Q5U651 963 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 FAM160B2Q86V87 743 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 FAM126BQ8IXS8 530 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 CCDC144CPQ8IYA2 1237 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 GMCL1Q96IK5 515 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.15■□□□□ 0.18
SS18-204ENST00000539244 ACAD9Q9H845 621 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 ZNF536O15090 1300 aa16.15■□□□□ 0.18
SS18-204ENST00000539244 TMEM232C9JQI7 657 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 SLC3A2P08195 630 aaKnown RBP16.14■□□□□ 0.17
SS18-204ENST00000539244 PPIGQ13427 754 aaKnown RBP eCLIP16.14■□□□□ 0.174e-6■■□□□ 13.5
SS18-204ENST00000539244 GNASQ5JWF2 1037 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 PPP4R3BQ5MIZ7 849 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 ZMYM1Q5SVZ6 1142 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 CCDC174Q6PII3 467 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 PI4K2BQ8TCG2 481 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 CHURC1Q8WUH1 139 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 STAG1Q8WVM7 1258 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 SEC62Q99442 399 aaKnown RBP16.14■□□□□ 0.17
SS18-204ENST00000539244 A1CFQ9NQ94 594 aaKnown RBP16.14■□□□□ 0.17
SS18-204ENST00000539244 LRRC37A2A6NM11 1700 aa16.14■□□□□ 0.17
SS18-204ENST00000539244 ERC2O15083 957 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 CD4P01730 458 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 TFAP4Q01664 338 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 CNTN2Q02246 1040 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 PPARAQ07869 468 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 GRIN2CQ14957 1233 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 TKFCQ3LXA3 575 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 TMEM240Q5SV17 173 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 C16orf59Q7L2K0 433 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 SLC43A3Q8NBI5 491 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 NAPBQ9H115 298 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 ZNF576Q9H609 170 aa16.13■□□□□ 0.17
SS18-204ENST00000539244 GNEQ9Y223 722 aaKnown RBP16.13■□□□□ 0.17
SS18-204ENST00000539244 SOWAHBA6NEL2 793 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 ASB14A6NK59 587 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 TLR3O15455 904 aaKnown RBP16.12■□□□□ 0.17
SS18-204ENST00000539244 SLC1A4P43007 532 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 TMEM199Q8N511 208 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 TIFAQ96CG3 184 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 AGBL1Q96MI9 1066 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 HOMER2Q9NSB8 354 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 RNF146Q9NTX7 359 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.12■□□□□ 0.17
SS18-204ENST00000539244 ASTN1O14525 1302 aa16.12■□□□□ 0.17
SS18-204ENST00000539244 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.11■□□□□ 0.17
SS18-204ENST00000539244 FOXP2O15409 715 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 CABYRO75952 493 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 CSF2RAP15509 400 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 NOVP48745 357 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 TNFAIP2Q03169 654 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 PSRC1Q6PGN9 363 aaPredicted RBP16.11■□□□□ 0.17
SS18-204ENST00000539244 CCDC129Q6ZRS4 1044 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 VTI1AQ96AJ9 217 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 TRERF1Q96PN7 1200 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 SEZ6LQ9BYH1 1024 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 MUC3AQ02505 3323 aa16.11■□□□□ 0.17
SS18-204ENST00000539244 LCTP09848 1927 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 MCCP23508 829 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 RCSD1Q6JBY9 416 aa16.1■□□□□ 0.17
SS18-204ENST00000539244 SYMPKQ92797 1274 aaKnown RBP16.1■□□□□ 0.17
SS18-204ENST00000539244 FSD1Q9BTV5 496 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms