RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C17orf50Q8WW18 174 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 ARHGEF1Q92888 912 aaKnown RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 CENPTQ96BT3 561 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 NUP88Q99567 741 aaPredicted RBP13.76□□□□□ -0.21
USP3-203ENST00000538686 VCX3BQ9H321 246 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 VCX3AQ9NNX9 186 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 PANK4Q9NVE7 773 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 KCNH3Q9ULD8 1083 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 SNX12Q9UMY4 172 aa13.76□□□□□ -0.21
USP3-203ENST00000538686 DLC1Q96QB1 1528 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 ASAP2O43150 1006 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 ATP6V1G1O75348 118 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 BAG3O95817 575 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 POLR3DP05423 398 aaPredicted RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 PIP4K2AP48426 406 aaPredicted RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 IMMTQ16891 758 aaKnown RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 CDKAL1Q5VV42 579 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 FOXP4Q8IVH2 680 aaPredicted RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 CNBD1Q8NA66 436 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 PPP1R14BQ96C90 147 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 IFT74Q96LB3 600 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 FAM167BQ9BTA0 163 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 PLCB1Q9NQ66 1216 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 GDF3Q9NR23 364 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 MYH8P13535 1937 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 DRD4P21917 467 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 CDC25CP30307 473 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 PPP2R2AP63151 447 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 SPAG1Q07617 926 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 KLC1Q07866 573 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 PABPC1LQ4VXU2 614 aaKnown RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 HAUS3Q68CZ6 603 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 DZIP3Q86Y13 1208 aaKnown RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 CREG2Q8IUH2 290 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 AFAP1Q8N556 730 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 DYDC1Q8WWB3 177 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 KIFAP3Q92845 792 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 CHMP6Q96FZ7 201 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 TSPYL4Q9UJ04 414 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 ZNF510Q9Y2H8 683 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 WDR37Q9Y2I8 494 aa13.75□□□□□ -0.21
USP3-203ENST00000538686 REXO2Q9Y3B8 237 aaKnown RBP13.75□□□□□ -0.21
USP3-203ENST00000538686 M0R2C6 588 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 YY1P25490 414 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 GBP1P32455 592 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 HPDP32754 393 aaPredicted RBP13.74□□□□□ -0.21
USP3-203ENST00000538686 CYLC1P35663 651 aaPredicted RBP13.74□□□□□ -0.21
USP3-203ENST00000538686 PAFAH1B1P43034 410 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 PABPC4Q13310 644 aaKnown RBP eCLIP13.74□□□□□ -0.219e-6■■■■□ 24.7
USP3-203ENST00000538686 LONRF3Q496Y0 759 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 SH2D4BQ5SQS7 431 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 SLC9C2Q5TAH2 1124 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 ANO7Q6IWH7 933 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 TBC1D1Q86TI0 1168 aaPredicted RBP13.74□□□□□ -0.21
USP3-203ENST00000538686 KIAA0825Q8IV33 1275 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 ARHGAP18Q8N392 663 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 FBXL16Q8N461 479 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 FBF1Q8TES7 1133 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 RAPGEF5Q92565 580 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 IWS1Q96ST2 819 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 FAM192AQ9GZU8 254 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 PCMTD2Q9NV79 361 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 MIS18AQ9NYP9 233 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 RNF14Q9UBS8 474 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 ZRANB1Q9UGI0 708 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 SUN2Q9UH99 717 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 CIDEBQ9UHD4 219 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 NRKQ7Z2Y5 1582 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 SYNRGQ9UMZ2 1314 aa13.74□□□□□ -0.21
USP3-203ENST00000538686 ATP6V1C1P21283 382 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 GIGYF2Q6Y7W6 1299 aaKnown RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 TRMT44Q8IYL2 757 aaKnown RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 JPH4Q96JJ6 628 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 FGD4Q96M96 766 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 PURBQ96QR8 312 aaKnown RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 AFF2P51816 1311 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 HIP1RO75146 1068 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 PDIA3P30101 505 aaKnown RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 KRT9P35527 623 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 HSPA9P38646 679 aaKnown RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 KIF23Q02241 960 aaPredicted RBP13.73□□□□□ -0.21
USP3-203ENST00000538686 ADAM9Q13443 819 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 Q4G0T1 1027 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 SYCP3Q8IZU3 236 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 HDAC7Q8WUI4 952 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 IQCDQ96DY2 449 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 SLC4A7Q9Y6M7 1214 aa13.73□□□□□ -0.21
USP3-203ENST00000538686 E2F6O75461 281 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 FDPSP14324 419 aaKnown RBP13.72□□□□□ -0.21
USP3-203ENST00000538686 ACADSP16219 412 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 MARCKSP29966 332 aaPredicted RBP13.72□□□□□ -0.21
USP3-203ENST00000538686 PCK1P35558 622 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 MAP3K12Q12852 859 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 TSNAXIP1Q2TAA8 658 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 EFCAB2Q5VUJ9 269 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 FAM163AQ96GL9 167 aaPredicted RBP13.72□□□□□ -0.21
USP3-203ENST00000538686 RMDN2Q96LZ7 410 aa13.72□□□□□ -0.21
USP3-203ENST00000538686 UBE2OQ9C0C9 1292 aaKnown RBP13.72□□□□□ -0.21
USP3-203ENST00000538686 TRIM10Q9UDY6 481 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms