RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SHMT1P34896 483 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 KIAA0825Q8IV33 1275 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 LRRC8AQ8IWT6 810 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 CNNM3Q8NE01 707 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 SPZ1Q9BXG8 430 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLIP1-210ENST00000538120 SERTAD1Q9UHV2 236 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 PCDHA4Q9UN74 947 aa12.23□□□□□ -0.45
CLIP1-210ENST00000538120 V9GYY5 206 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-210ENST00000538120 ZNF646O15015 1829 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-210ENST00000538120 USP17L5A8MUK1 530 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 POLR2DO15514 142 aaKnown RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 CALML3P27482 149 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 AOC3Q16853 763 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 ISM2Q6H9L7 571 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 CCDC112Q8NEF3 446 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 BARHL2Q9NY43 387 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 SCN9AQ15858 1988 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 A0A087X0B3 334 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 ACTN4O43707 911 aaKnown RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 PARP1P09874 1014 aaKnown RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 TRAPPC10P48553 1259 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 ATP2C1P98194 919 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 CEP135Q66GS9 1140 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 FILIP1Q7Z7B0 1213 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 DAGLBQ8NCG7 672 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 RASGRP4Q8TDF6 673 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 NAT10Q9H0A0 1025 aaKnown RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 TRMT1Q9NXH9 659 aaKnown RBP12.22□□□□□ -0.45
CLIP1-210ENST00000538120 SERPINB13Q9UIV8 391 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 PCDHA6Q9UN73 950 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 PCDHA8Q9Y5H6 950 aa12.22□□□□□ -0.45
CLIP1-210ENST00000538120 C2orf72A6NCS6 295 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 BECN2A8MW95 431 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 BMP15O95972 392 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 SMARCA1P28370 1054 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 HDLBPQ00341 1268 aaKnown RBP12.21□□□□□ -0.45
CLIP1-210ENST00000538120 PTGDRQ13258 359 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 NCAPHQ15003 741 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 IL17AQ16552 155 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 CLEC10AQ8IUN9 316 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 C4orf32Q8N8J7 132 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 EPSTI1Q96J88 318 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 PLCD4Q9BRC7 762 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 SWAP70Q9UH65 585 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 PCDHA5Q9Y5H7 936 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 MYO3BQ8WXR4 1341 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 PDHBP11177 359 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 BMP6P22004 513 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 CACNB3P54284 484 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 SH3BP5LQ7L8J4 393 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 HEATR3Q7Z4Q2 680 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 FERMT2Q96AC1 680 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 DNAJC18Q9H819 358 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 FAM198AQ9UFP1 575 aa12.21□□□□□ -0.45
CLIP1-210ENST00000538120 YDJCA8MPS7 323 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 SNHG28P0DPA3 235 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 SKILP12757 684 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 CDC25BP30305 580 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 SARSP49591 514 aaKnown RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 UBA5Q9GZZ9 404 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 PAXBP1Q9Y5B6 917 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 C21orf2O43822 256 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 EIF6P56537 245 aaKnown RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 ZRSR1Q15695 479 aaKnown RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 NT5DC1Q5TFE4 455 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 DEFB132Q7Z7B7 95 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 GRAMD1CQ8IYS0 662 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 LRRC47Q8N1G4 583 aaKnown RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 PDILTQ8N807 584 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 SYMPKQ92797 1274 aaKnown RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 FEZ1Q99689 392 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 IDI2Q9BXS1 227 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 EHD4Q9H223 541 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 HSD3B7Q9H2F3 369 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 RIOX1Q9H6W3 641 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 OGFRQ9NZT2 677 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 ZNF215Q9UL58 517 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-210ENST00000538120 C10orf71Q711Q0 1435 aa12.2□□□□□ -0.46
CLIP1-210ENST00000538120 FRMPD2Q68DX3 1309 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-210ENST00000538120 DDTLA6NHG4 134 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-210ENST00000538120 MCM7P33993 719 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 CCZ1BP86790 482 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 CCZ1P86791 482 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-210ENST00000538120 POSTNQ15063 836 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 GALNT17Q6IS24 598 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 CCDC148Q8NFR7 591 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 MRFAP1L1Q96HT8 127 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 PIGSQ96S52 555 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 ZMYND12Q9H0C1 365 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 SERPINA10Q9UK55 444 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 HLA-DOAP06340 250 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 SYCP1Q15431 976 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 LHX8Q68G74 356 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 SH3RF1Q7Z6J0 888 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 SPATA20Q8TB22 786 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 VAT1LQ9HCJ6 419 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 DDX41Q9UJV9 622 aaKnown RBP12.19□□□□□ -0.46
CLIP1-210ENST00000538120 MAN1B1Q9UKM7 699 aa12.19□□□□□ -0.46
CLIP1-210ENST00000538120 VWA3AA6NCI4 1184 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms