RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 KCNA10Q16322 511 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 FAM109BQ6ICB4 259 aaPredicted RBP10.04□□□□□ -0.8
USP28-203ENST00000537490 CCSAPQ6IQ19 270 aaPredicted RBP10.04□□□□□ -0.8
USP28-203ENST00000537490 RASGRP2Q7LDG7 609 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 STAG1Q8WVM7 1258 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 GMCL1Q96IK5 515 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 AGBL1Q96MI9 1066 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 FAM161BQ96MY7 647 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 TSEN34Q9BSV6 310 aaKnown RBP10.04□□□□□ -0.8
USP28-203ENST00000537490 HOMER2Q9NSB8 354 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 FBXO40Q9UH90 709 aa10.04□□□□□ -0.8
USP28-203ENST00000537490 ISY1Q9ULR0 285 aaKnown RBP10.04□□□□□ -0.8
USP28-203ENST00000537490 SOWAHBA6NEL2 793 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 TSPY2A6NKD2 308 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 DLL1O00548 723 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 KIAA0355O15063 1070 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 PQBP1O60828 265 aaKnown RBP10.03□□□□□ -0.8
USP28-203ENST00000537490 DUSP11O75319 330 aaKnown RBP10.03□□□□□ -0.8
USP28-203ENST00000537490 CLTBP09497 229 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 FDX1P10109 184 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 SLC1A4P43007 532 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 STAT2P52630 851 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 EPHB4P54760 987 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 CNTN2Q02246 1040 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 CCDC144BQ3MJ40 725 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 RCSD1Q6JBY9 416 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 KCTD1Q719H9 257 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 ARMCX2Q7L311 632 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 FAM160B2Q86V87 743 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 FAM133AQ8N9E0 248 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 CHURC1Q8WUH1 139 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 EVI5LQ96CN4 794 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 GUCD1Q96NT3 240 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 KATNBL1Q9H079 304 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 ABHD16BQ9H3Z7 469 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 STARD7Q9NQZ5 370 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 RNF146Q9NTX7 359 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 ZBTB47Q9UFB7 747 aaPredicted RBP10.03□□□□□ -0.8
USP28-203ENST00000537490 ANAPC4Q9UJX5 808 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 STX8Q9UNK0 236 aa10.03□□□□□ -0.8
USP28-203ENST00000537490 MOXD2PA6NHM9 499 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 RANBP6O60518 1105 aaKnown RBP10.02□□□□□ -0.81
USP28-203ENST00000537490 PLA2G6O60733 806 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 FGRP09769 529 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 ALAS1P13196 640 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 RAG1P15918 1043 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 NOVP48745 357 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 FAAP100Q0VG06 881 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 IKQ13123 557 aaPredicted RBP10.02□□□□□ -0.81
USP28-203ENST00000537490 HDAC1Q13547 482 aaPredicted RBP10.02□□□□□ -0.81
USP28-203ENST00000537490 ALX1Q15699 326 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 CCDC174Q6PII3 467 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 ANKRD33Q7Z3H0 272 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 CCDC144CPQ8IYA2 1237 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 NUP133Q8WUM0 1156 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 FAM227BQ96M60 508 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 TOX2Q96NM4 488 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 TRERF1Q96PN7 1200 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 ACAD9Q9H845 621 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 A1CFQ9NQ94 594 aaKnown RBP10.02□□□□□ -0.81
USP28-203ENST00000537490 HELLSQ9NRZ9 838 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 TMEM39AQ9NV64 488 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 PRR12Q9ULL5 1215 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 MTMR7Q9Y216 660 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 DDX49Q9Y6V7 483 aaKnown RBP10.02□□□□□ -0.81
USP28-203ENST00000537490 LAMA3Q16787 3333 aa10.02□□□□□ -0.81
USP28-203ENST00000537490 A0A0D9SFI3 127 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.01□□□□□ -0.81
USP28-203ENST00000537490 CTAGE5O15320 804 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 ORC4O43929 436 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 FGAP02671 866 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 ASGR1P07306 291 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 C6orf222P0C671 652 aaPredicted RBP10.01□□□□□ -0.81
USP28-203ENST00000537490 CST5P28325 142 aaPredicted RBP10.01□□□□□ -0.81
USP28-203ENST00000537490 CDK7P50613 346 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 GJA9P57773 515 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 TKFCQ3LXA3 575 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 MUM1L1Q5H9M0 696 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 PPP4R3BQ5MIZ7 849 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 ZNF697Q5TEC3 545 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 TTBK2Q6IQ55 1244 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 UPF3AQ9H1J1 476 aaKnown RBP10.01□□□□□ -0.81
USP28-203ENST00000537490 ASTN1O14525 1302 aa10.01□□□□□ -0.81
USP28-203ENST00000537490 LTBP2Q14767 1821 aa10□□□□□ -0.81
USP28-203ENST00000537490 PLXNA1Q9UIW2 1896 aa10□□□□□ -0.81
USP28-203ENST00000537490 DCDC2CA8MYV0 355 aa10□□□□□ -0.81
USP28-203ENST00000537490 HSPD1P10809 573 aaKnown RBP10□□□□□ -0.81
USP28-203ENST00000537490 PTGS1P23219 599 aa10□□□□□ -0.81
USP28-203ENST00000537490 SLC16A2P36021 539 aa10□□□□□ -0.81
USP28-203ENST00000537490 NKX3-2P78367 333 aa10□□□□□ -0.81
USP28-203ENST00000537490 SMAD3P84022 425 aaKnown RBP10□□□□□ -0.81
USP28-203ENST00000537490 BEX3Q00994 111 aa10□□□□□ -0.81
USP28-203ENST00000537490 NMIQ13287 307 aaPredicted RBP10□□□□□ -0.81
USP28-203ENST00000537490 CCDC96Q2M329 555 aa10□□□□□ -0.81
USP28-203ENST00000537490 MCMDC2Q4G0Z9 681 aa10□□□□□ -0.81
USP28-203ENST00000537490 RRP12Q5JTH9 1297 aaKnown RBP10□□□□□ -0.81
USP28-203ENST00000537490 GNASQ5JWF2 1037 aa10□□□□□ -0.81
USP28-203ENST00000537490 TMEM63BQ5T3F8 832 aa10□□□□□ -0.81
USP28-203ENST00000537490 ZNF589Q86UQ0 364 aaPredicted RBP10□□□□□ -0.81
USP28-203ENST00000537490 PCSK9Q8NBP7 692 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms