RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 ZNF507Q8TCN5 953 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 KAT14Q9H8E8 782 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 ZNF831Q5JPB2 1677 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 PSMD14O00487 310 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 RPS6KA4O75676 772 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 CALML3P27482 149 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 ACTN2P35609 894 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 LONP1P36776 959 aaKnown RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 SLC4A8Q2Y0W8 1093 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 RCSD1Q6JBY9 416 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 TXNRD3Q86VQ6 643 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 MB21D1Q8N884 522 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 OR8K1Q8NGG5 319 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 FEZ2Q9UHY8 353 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 FAN1Q9Y2M0 1017 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 A0A0U1RQG5 324 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 TRIM49BA6NDI0 452 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 LGALS16A8MUM7 142 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 USP17L8P0C7I0 530 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 PMS1P54277 932 aaKnown RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 GUCA1BQ9UMX6 200 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 A0A1W2PQC6 194 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 LRRIQ3A6PVS8 624 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 HERVK_113P62684 666 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 TFAP4Q01664 338 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 NAALADL2Q58DX5 795 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 RC3H1Q5TC82 1133 aaKnown RBP12.97□□□□□ -0.33
SYNE1-234ENST00000536990 WDR59Q6PJI9 974 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 HAUS4Q9H6D7 363 aa12.97□□□□□ -0.33
SYNE1-234ENST00000536990 FAM205AQ6ZU69 1335 aa12.96□□□□□ -0.33
SYNE1-234ENST00000536990 STAT6P42226 847 aa12.96□□□□□ -0.33
SYNE1-234ENST00000536990 BLIDQ8IZY5 108 aa12.96□□□□□ -0.33
SYNE1-234ENST00000536990 ZBTB9Q96C00 473 aa12.96□□□□□ -0.33
SYNE1-234ENST00000536990 CAPN11Q9UMQ6 739 aa12.96□□□□□ -0.33
SYNE1-234ENST00000536990 C12orf60Q5U649 245 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 DGKHQ86XP1 1220 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 PNMA1Q8ND90 353 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 TSPYL1Q9H0U9 437 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 DISC1Q9NRI5 854 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 HDAC6Q9UBN7 1215 aa12.96□□□□□ -0.34
SYNE1-234ENST00000536990 LUC7L2Q9Y383 392 aaKnown RBP12.96□□□□□ -0.34
SYNE1-234ENST00000536990 KIAA1551Q9HCM1 1747 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 GNPATO15228 680 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 KLRC4O43908 158 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 EEF1GP26641 437 aaKnown RBP12.95□□□□□ -0.34
SYNE1-234ENST00000536990 USP14P54578 494 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 ZNF662Q6ZS27 426 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 FAM71BQ8TC56 605 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 THAP9Q9H5L6 903 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 PODXL2Q9NZ53 605 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 RPS6KA5O75582 802 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 LDHBP07195 334 aaKnown RBP12.95□□□□□ -0.34
SYNE1-234ENST00000536990 KCNB1Q14721 858 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 MEA1Q16626 185 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 PAPD7Q5XG87 772 aaKnown RBP12.95□□□□□ -0.34
SYNE1-234ENST00000536990 MKNK2Q9HBH9 465 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 SH3GLB2Q9NR46 395 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 CWC15Q9P013 229 aaKnown RBP12.95□□□□□ -0.34
SYNE1-234ENST00000536990 LCMT1Q9UIC8 334 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 MAST2Q6P0Q8 1798 aa12.95□□□□□ -0.34
SYNE1-234ENST00000536990 ENC1O14682 589 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 ATP1A1P05023 1023 aaKnown RBP12.94□□□□□ -0.34
SYNE1-234ENST00000536990 TM4SF1P30408 202 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 PTF1AQ7RTS3 328 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC148Q8NFR7 591 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 WDR66Q8TBY9 1149 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 GPKOWQ92917 476 aaPredicted RBP eCLIP12.94□□□□□ -0.34
SYNE1-234ENST00000536990 DYNLL2Q96FJ2 89 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 MMS19Q96T76 1030 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 IL17RBQ9NRM6 502 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 PCDHA4Q9UN74 947 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 TFR2Q9UP52 801 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 M0R2N6 131 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 NT5C2P49902 561 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 GNAQP50148 359 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 AMOTL1Q8IY63 956 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 STAG2Q8N3U4 1231 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 TTYH3Q9C0H2 523 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 VIPAS39Q9H9C1 493 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 ANKIB1Q9P2G1 1089 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 RTCBQ9Y3I0 505 aaKnown RBP12.94□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC178Q5BJE1 867 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 TTI2Q6NXR4 508 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 MED4Q9NPJ6 270 aa12.94□□□□□ -0.34
SYNE1-234ENST00000536990 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC194A0A1B0GVG4 234 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 RASSF10A6NK89 507 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 PP2D1A8MPX8 630 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 RHOBTB3O94955 611 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 SRGNP10124 158 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC122Q5T0U0 273 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 GIMAP8Q8ND71 665 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 RASGRP4Q8TDF6 673 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 SH3RF3Q8TEJ3 882 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 ANKS1AQ92625 1134 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC102AQ96A19 550 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 TMEM60Q9H2L4 133 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 KBTBD4Q9NVX7 518 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 SAR1BQ9Y6B6 198 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 BAG3O95817 575 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms