RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	NOP58	Q9Y2X3	529 aa	Known RBP	7.63	□□□□□ -1.19
PRKDC-208	ENST00000536710	DNAJC25-GNG10	A0A024R161	153 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	SSU72P8	A0A1W2PR75	194 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	RFPL3	O75679	317 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	RASSF7	Q02833	373 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	SCRN1	Q12765	414 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	USP53	Q70EK8	1073 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	ZNF655	Q8N720	491 aa	Predicted RBP	7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	DAGLB	Q8NCG7	672 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	SHKBP1	Q8TBC3	707 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	TCTN2	Q96GX1	697 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	CLUHP3	Q96NS8	147 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	GPR62	Q9BZJ7	368 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710	CYP26B1	Q9NR63	512 aa		7.62	□□□□□ -1.19
PRKDC-208	ENST00000536710		H3BS24	57 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	CP	P00450	1065 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	CAPNS1	P04632	268 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	CTSK	P43235	329 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	NOP2	P46087	812 aa	Known RBP	7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	OXCT1	P55809	520 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	MAP4K2	Q12851	820 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	TM4SF20	Q53R12	229 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	CNNM4	Q6P4Q7	775 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	ZSWIM5	Q9P217	1185 aa		7.61	□□□□□ -1.19
PRKDC-208	ENST00000536710	IGLV1-40	P01703	118 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	CEACAM5	P06731	702 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	CDK11B	P21127	795 aa	Known RBP	7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	GABRE	P78334	506 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	DOC2B	Q14184	412 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	CT47A1	Q5JQC4	288 aa	Predicted RBP	7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	HSPA12B	Q96MM6	686 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	BRINP2	Q9C0B6	783 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	DUSP15	Q9H1R2	295 aa	Predicted RBP	7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	GPRC5C	Q9NQ84	441 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	RNF112	Q9ULX5	631 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	BACE2	Q9Y5Z0	518 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710		U3KQE9	123 aa		7.6	□□□□□ -1.19
PRKDC-208	ENST00000536710	C2orf71	A6NGG8	1288 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	WASH4P	A8MWX3	477 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	GSC2	O15499	205 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	APP	P05067	770 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	SYP	P08247	313 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	GSTM1	P09488	218 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	C6orf222	P0C671	652 aa	Predicted RBP	7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	SRF	P11831	508 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	IFNGR1	P15260	489 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	FST	P19883	344 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	TPP2	P29144	1249 aa	Predicted RBP	7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	SEPHS1	P49903	392 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	NKPD1	Q17RQ9	610 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	PLA2G4E	Q3MJ16	856 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	KSR1	Q8IVT5	923 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	CHAC2	Q8WUX2	184 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	PTPRN2	Q92932	1015 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	UBE2F	Q969M7	185 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	MCMBP	Q9BTE3	642 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	SLC52A2	Q9HAB3	445 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	ST14	Q9Y5Y6	855 aa		7.59	□□□□□ -1.19
PRKDC-208	ENST00000536710	AURKA	O14965	403 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	CYP26A1	O43174	497 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	PDE8A	O60658	829 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	EFCAB14	O75071	495 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	FKTN	O75072	461 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	GDF11	O95390	407 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	SCG5	P05408	212 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	THBD	P07204	575 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	SDS	P20132	328 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	LTK	P29376	864 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	BMP8B	P34820	402 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	PCBP3	P57721	371 aa	Known RBP	7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	KCNMA1	Q12791	1236 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	NTRK3	Q16288	839 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	BRAP	Q7Z569	592 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	SPACA3	Q8IXA5	215 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	PPIL6	Q8IXY8	311 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	SLC7A14	Q8TBB6	771 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	FCRL3	Q96P31	734 aa	Predicted RBP	7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	MAGEC2	Q9UBF1	373 aa	Predicted RBP	7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	DUSP13	Q9UII6	198 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	TRAF6	Q9Y4K3	522 aa		7.58	□□□□□ -1.2
PRKDC-208	ENST00000536710	OPA1	O60313	960 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	VAV1	P15498	845 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	CLCN7	P51798	805 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	AMPD3	Q01432	767 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	SLC35F1	Q5T1Q4	408 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	PLD6	Q8N2A8	252 aa	Known RBP	7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	UBR7	Q8N806	425 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	C1orf159	Q96HA4	380 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	SLC12A9	Q9BXP2	914 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	FOXP3	Q9BZS1	431 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	MKNK2	Q9HBH9	465 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	TCFL5	Q9UL49	500 aa		7.57	□□□□□ -1.2
PRKDC-208	ENST00000536710	MEFV	O15553	781 aa	Predicted RBP	7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	VIL1	P09327	827 aa	Known RBP	7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	SOX5	P35711	763 aa		7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	TRIM61	Q5EBN2	209 aa		7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	MAMDC2	Q7Z304	686 aa	Predicted RBP	7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	KRT26	Q7Z3Y9	468 aa		7.56	□□□□□ -1.2
PRKDC-208	ENST00000536710	LRRTM3	Q86VH5	581 aa		7.56	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms