RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 ZBTB5O15062 677 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 UBXN1Q04323 297 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 PTPAQ15257 358 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 NOM1Q5C9Z4 860 aaKnown RBP12.47□□□□□ -0.41
TRIM3-211ENST00000532542 PAGE5Q96GU1 130 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 MXD3Q9BW11 206 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 PICK1Q9NRD5 415 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 NUP188Q5SRE5 1749 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 AKR1B15C9JRZ8 316 aaPredicted RBP12.47□□□□□ -0.41
TRIM3-211ENST00000532542 CFBP00751 764 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 SPA17Q15506 151 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 SLFN12Q8IYM2 578 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 GRAMD1CQ8IYS0 662 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 ENOX1Q8TC92 643 aaKnown RBP12.47□□□□□ -0.41
TRIM3-211ENST00000532542 CSGALNACT2Q8N6G5 542 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 IGSF22Q8N9C0 903 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 KIFC2Q96AC6 838 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 TAOK3Q9H2K8 898 aa12.47□□□□□ -0.41
TRIM3-211ENST00000532542 UBE2Q2LH0YL09 131 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 ENTPD3O75355 529 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 GH2P01242 217 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 TRIM14Q14142 442 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 SPECC1LQ69YQ0 1117 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 BAG1Q99933 345 aaPredicted RBP12.46□□□□□ -0.41
TRIM3-211ENST00000532542 MRPL11Q9Y3B7 192 aaKnown RBP12.46□□□□□ -0.41
TRIM3-211ENST00000532542 NUP98P52948 1817 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 DCAF15Q66K64 600 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 ILDR1Q86SU0 546 aaPredicted RBP12.46□□□□□ -0.41
TRIM3-211ENST00000532542 HERC5Q9UII4 1024 aaKnown RBP12.46□□□□□ -0.41
TRIM3-211ENST00000532542 EEF2P13639 858 aaKnown RBP12.46□□□□□ -0.41
TRIM3-211ENST00000532542 SEPT2Q15019 361 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 ANKS1AQ92625 1134 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 ZDHHC15Q96MV8 337 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 FUCA2Q9BTY2 467 aa12.46□□□□□ -0.41
TRIM3-211ENST00000532542 FGRP09769 529 aa12.46□□□□□ -0.42
TRIM3-211ENST00000532542 CDC37Q16543 378 aaPredicted RBP12.46□□□□□ -0.42
TRIM3-211ENST00000532542 SYDE2Q5VT97 1194 aa12.46□□□□□ -0.42
TRIM3-211ENST00000532542 LRRC8AQ8IWT6 810 aa12.46□□□□□ -0.42
TRIM3-211ENST00000532542 DISC1Q9NRI5 854 aa12.46□□□□□ -0.42
TRIM3-211ENST00000532542 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.42
TRIM3-211ENST00000532542 TOGARAM1Q9Y4F4 1720 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 FAM205CA6NFA0 338 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 DYNC1I1O14576 645 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 CASQ1P31415 396 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 CCDC174Q6PII3 467 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 SPICE1Q8N0Z3 855 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 VPS16Q9H269 839 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 ZNF277Q9NRM2 450 aaPredicted RBP12.45□□□□□ -0.42
TRIM3-211ENST00000532542 MAD2L2Q9UI95 211 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 GAKO14976 1311 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 PALM3A6NDB9 673 aaPredicted RBP12.45□□□□□ -0.42
TRIM3-211ENST00000532542 FAM196BA6NMK8 535 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 URI1O94763 535 aaPredicted RBP12.45□□□□□ -0.42
TRIM3-211ENST00000532542 CCDC175P0C221 793 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 ZNF543Q08ER8 600 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 TTLL12Q14166 644 aaPredicted RBP12.45□□□□□ -0.42
TRIM3-211ENST00000532542 DNM3Q9UQ16 869 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 PDHBP11177 359 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 CDC25AP30304 524 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 STAT2P52630 851 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 NCAPH2Q6IBW4 605 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 STK17AQ9UEE5 414 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 PNMA2Q9UL42 364 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 PCDHA6Q9UN73 950 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 PCDHA8Q9Y5H6 950 aa12.45□□□□□ -0.42
TRIM3-211ENST00000532542 GCOM1H8Y6P7 765 aaPredicted RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 POLR2MP0CAP2 368 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 LRMPQ12912 555 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 PKN1Q16512 942 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 RCSD1Q6JBY9 416 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 LUC7L2Q9Y383 392 aaKnown RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ARHGAP6O43182 974 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 IQCB1Q15051 598 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 PRR16Q569H4 304 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 DYMQ7RTS9 669 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 PLA2G4DQ86XP0 818 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ELOA2Q8IYF1 753 aaPredicted RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ADGRF4Q8IZF3 695 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 C17orf53Q8N3J3 647 aaPredicted RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 CAGE1Q8TC20 777 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 NYAP2Q9P242 653 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 NRBP1Q9UHY1 535 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ZBED4O75132 1171 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 GNG11P61952 73 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 RBM10P98175 930 aaKnown RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 MORC3Q14149 939 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ZNF658Q5TYW1 1059 aaPredicted RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 METTL16Q86W50 562 aaKnown RBP12.44□□□□□ -0.42
TRIM3-211ENST00000532542 CEP89Q96ST8 783 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 IL17RBQ9NRM6 502 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 TUBE1Q9UJT0 475 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 ZNRF3Q9ULT6 936 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 PAPPAQ13219 1627 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 F5H6K3 240 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 STXBP3O00186 592 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 PRPHP41219 470 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 TERF1P54274 439 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 KLRC3Q07444 240 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 AMIGO3Q86WK7 504 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms