RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RILPL2Q969X0 211 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 LNPKQ9C0E8 428 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 ABHD16BQ9H3Z7 469 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 RWDD1Q9H446 243 aaPredicted RBP17.42■□□□□ 0.38
VPS28-215ENST00000531924 INCENPQ9NQS7 918 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 STARD7Q9NQZ5 370 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 PDLIM7Q9NR12 457 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 RNF146Q9NTX7 359 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 ANAPC4Q9UJX5 808 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.42■□□□□ 0.381e-7■■■■□ 24.2
VPS28-215ENST00000531924 SYNRGQ9UMZ2 1314 aa17.42■□□□□ 0.38
VPS28-215ENST00000531924 LAMA3Q16787 3333 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 NMT2O60551 498 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 DUSP11O75319 330 aaKnown RBP17.41■□□□□ 0.38
VPS28-215ENST00000531924 CLTBP09497 229 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 C6orf222P0C671 652 aaPredicted RBP17.41■□□□□ 0.38
VPS28-215ENST00000531924 ALAS1P13196 640 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 ACLYP53396 1101 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 ALX1Q15699 326 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 B4GALNT3Q6L9W6 998 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS28-215ENST00000531924 ARMCX2Q7L311 632 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 TICAM2Q86XR7 235 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 FAM227BQ96M60 508 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 AGBL1Q96MI9 1066 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 TRERF1Q96PN7 1200 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 TMEM39AQ9NV64 488 aa17.41■□□□□ 0.38
VPS28-215ENST00000531924 MOXD2PA6NHM9 499 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 DCDC2CA8MYV0 355 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 FOXP2O15409 715 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 ORC4O43929 436 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 PLA2G6O60733 806 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 ADAMTS4O75173 837 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 RAG1P15918 1043 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 MFAP1P55081 439 aaKnown RBP17.4■□□□□ 0.38
VPS28-215ENST00000531924 KCNA10Q16322 511 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 CCDC144BQ3MJ40 725 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 SH3RF1Q7Z6J0 888 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 PCSK9Q8NBP7 692 aaKnown RBP17.4■□□□□ 0.38
VPS28-215ENST00000531924 GLT1D1Q96MS3 346 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 IL17RBQ9NRM6 502 aa17.4■□□□□ 0.38
VPS28-215ENST00000531924 ZNFX1Q9P2E3 1918 aaKnown RBP17.4■□□□□ 0.38
VPS28-215ENST00000531924 TRIM43BA6NCK2 446 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 FGAP02671 866 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 CNTN2Q02246 1040 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 SHHQ15465 462 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 GNASQ5JWF2 1037 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 CCDC144CPQ8IYA2 1237 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 DCAF4Q8WV16 495 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 TRIM43Q96BQ3 446 aaPredicted RBP17.39■□□□□ 0.37
VPS28-215ENST00000531924 MTMR10Q9NXD2 777 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 CCPG1Q9ULG6 757 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 PRR12Q9ULL5 1215 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 MYH4Q9Y623 1939 aa17.39■□□□□ 0.37
VPS28-215ENST00000531924 A0A0D9SFI3 127 aa17.38■□□□□ 0.37
VPS28-215ENST00000531924 ASB14A6NK59 587 aa17.38■□□□□ 0.37
VPS28-215ENST00000531924 TOP1P11387 765 aaKnown RBP17.38■□□□□ 0.37
VPS28-215ENST00000531924 SNAP25P60880 206 aa17.38■□□□□ 0.37
VPS28-215ENST00000531924 NMIQ13287 307 aaPredicted RBP17.38■□□□□ 0.37
VPS28-215ENST00000531924 KLHDC9Q8NEP7 349 aa17.38■□□□□ 0.37
VPS28-215ENST00000531924 A1CFQ9NQ94 594 aaKnown RBP17.38■□□□□ 0.37
VPS28-215ENST00000531924 STXBP5LQ9Y2K9 1186 aa17.38■□□□□ 0.37
VPS28-215ENST00000531924 PLXNA1Q9UIW2 1896 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 KIAA0355O15063 1070 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 HSPD1P10809 573 aaKnown RBP17.37■□□□□ 0.37
VPS28-215ENST00000531924 HAND2P61296 217 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 TNFAIP2Q03169 654 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 ZNF697Q5TEC3 545 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 NSMFQ6X4W1 530 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 MFSD6Q6ZSS7 791 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 FAM133AQ8N9E0 248 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 MROH7Q68CQ1 1323 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 CCDC171Q6TFL3 1326 aa17.37■□□□□ 0.37
VPS28-215ENST00000531924 ASGR1P07306 291 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 SLC16A2P36021 539 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 GJA9P57773 515 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 C9orf50Q5SZB4 431 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 FAM109BQ6ICB4 259 aaPredicted RBP17.36■□□□□ 0.37
VPS28-215ENST00000531924 ANKRD33Q7Z3H0 272 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 FGD4Q96M96 766 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 FAM161BQ96MY7 647 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 TOX2Q96NM4 488 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 AP5M1Q9H0R1 490 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 RNF41Q9H4P4 317 aaPredicted RBP17.36■□□□□ 0.37
VPS28-215ENST00000531924 GPCPD1Q9NPB8 672 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 ZNF536O15090 1300 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 ELP1O95163 1332 aa17.36■□□□□ 0.37
VPS28-215ENST00000531924 MYADML2A6NDP7 307 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 SOWAHBA6NEL2 793 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 ICAM1P05362 532 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 FGRP09769 529 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 PCP11498 1178 aaKnown RBP17.35■□□□□ 0.37
VPS28-215ENST00000531924 CST5P28325 142 aaPredicted RBP17.35■□□□□ 0.37
VPS28-215ENST00000531924 FPGSQ05932 587 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 SYDE2Q5VT97 1194 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 CHD1LQ86WJ1 897 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 RNPC3Q96LT9 517 aaKnown RBP17.35■□□□□ 0.37
VPS28-215ENST00000531924 TMEM47Q9BQJ4 181 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 DIAPH3Q9NSV4 1193 aa17.35■□□□□ 0.37
VPS28-215ENST00000531924 PNMA2Q9UL42 364 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms