RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MAP2K1Q02750 393 aaPredicted RBP24.35■■□□□ 1.49
VPS28-212ENST00000530836 PRRT2Q7Z6L0 340 aaPredicted RBP24.35■■□□□ 1.49
VPS28-212ENST00000530836 BTBD18B2RXH4 712 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 F5H6K3 240 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 YEATS4O95619 227 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 NLRP5P59047 1200 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 KLRC3Q07444 240 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 CCDC96Q2M329 555 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 ACER1Q8TDN7 264 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 USP28Q96RU2 1077 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 PTPN18Q99952 460 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 GOPCQ9HD26 462 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 BARHL2Q9NY43 387 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 TMX2Q9Y320 296 aa24.35■■□□□ 1.49
VPS28-212ENST00000530836 FRMPD2Q68DX3 1309 aaPredicted RBP24.34■■□□□ 1.49
VPS28-212ENST00000530836 GOLGA6L4A6NEF3 574 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 C19orf81C9J6K1 198 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 MOGSQ13724 837 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 SLC35G1Q2M3R5 365 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 RILPL1Q5EBL4 403 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 GPT2Q8TD30 523 aa24.34■■□□□ 1.49
VPS28-212ENST00000530836 NASPP49321 788 aaPredicted RBP24.33■■□□□ 1.49
VPS28-212ENST00000530836 MTMR2Q13614 643 aa24.33■■□□□ 1.49
VPS28-212ENST00000530836 SH3D19Q5HYK7 790 aa24.33■■□□□ 1.49
VPS28-212ENST00000530836 FASTKD5Q7L8L6 764 aaKnown RBP24.33■■□□□ 1.49
VPS28-212ENST00000530836 IFNL1Q8IU54 200 aa24.33■■□□□ 1.49
VPS28-212ENST00000530836 KCNG4Q8TDN1 519 aa24.33■■□□□ 1.49
VPS28-212ENST00000530836 SYAP1Q96A49 352 aaPredicted RBP24.33■■□□□ 1.49
VPS28-212ENST00000530836 GPCPD1Q9NPB8 672 aa24.33■■□□□ 1.49
VPS28-212ENST00000530836 THSD7BQ9C0I4 1608 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 A0A1W2PRG0 241 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 HMGCS2P54868 508 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 KIAA1683Q9H0B3 1180 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 WBP1LQ9NX94 342 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 IGF2BP3O00425 579 aaKnown RBP eCLIP24.32■■□□□ 1.48
VPS28-212ENST00000530836 GADD45BO75293 160 aaPredicted RBP24.32■■□□□ 1.48
VPS28-212ENST00000530836 RASGRP2Q7LDG7 609 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 HEATR3Q7Z4Q2 680 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 DAGLBQ8NCG7 672 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 PIBF1Q8WXW3 757 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 UBA5Q9GZZ9 404 aa24.32■■□□□ 1.48
VPS28-212ENST00000530836 ATAD5Q96QE3 1844 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 PNMA6FA0A0J9YX94 578 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 BTBD19C9JJ37 291 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 NDUFB10O96000 172 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 ANO1Q5XXA6 986 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 WWC2Q6AWC2 1192 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 ADGRF4Q8IZF3 695 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 PROCA1Q8NCQ7 364 aaPredicted RBP24.31■■□□□ 1.48
VPS28-212ENST00000530836 SHISA4Q96DD7 197 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 FEZ1Q99689 392 aa24.31■■□□□ 1.48
VPS28-212ENST00000530836 STXBP3O00186 592 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 USP14P54578 494 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 GPAT2Q6NUI2 795 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 LINC00301Q8NCQ3 95 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 PIGSQ96S52 555 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 VAT1LQ9HCJ6 419 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 EMILIN3Q9NT22 766 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 PCDHA4Q9UN74 947 aa24.3■■□□□ 1.48
VPS28-212ENST00000530836 PHIPQ8WWQ0 1821 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 RAD21O60216 631 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 BMP3P12645 472 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 GNA11P29992 359 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 CEBPZQ03701 1054 aaKnown RBP24.29■■□□□ 1.48
VPS28-212ENST00000530836 STK38Q15208 465 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 NPY5RQ15761 445 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 PPP1R18Q6NYC8 613 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 GADL1Q6ZQY3 521 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 KCTD1Q719H9 257 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 ANKRD23Q86SG2 305 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 HOMER1Q86YM7 354 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 FAM43AQ8N2R8 423 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 MTMR8Q96EF0 704 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 ZMYND12Q9H0C1 365 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 JMJD4Q9H9V9 463 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 TMOD4Q9NZQ9 345 aa24.29■■□□□ 1.48
VPS28-212ENST00000530836 ESYT2A0FGR8 921 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 ALDH1A1P00352 501 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 NR5A1Q13285 461 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 DGKZQ13574 1117 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 BLIDQ8IZY5 108 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 OXER1Q8TDS5 423 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 GPKOWQ92917 476 aaPredicted RBP eCLIP24.28■■□□□ 1.48
VPS28-212ENST00000530836 C12orf42Q96LP6 360 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 BEGAINQ9BUH8 593 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 ZCCHC17Q9NP64 241 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 RNF186Q9NXI6 227 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 NOL7Q9UMY1 257 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 BAZ2BQ9UIF8 2168 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 ZBTB5O15062 677 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 NAPAP54920 295 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 SLC39A14Q15043 492 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 SF3A1Q15459 793 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 ZYXQ15942 572 aaKnown RBP24.28■■□□□ 1.48
VPS28-212ENST00000530836 BTNL9Q6UXG8 535 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 BICD2Q8TD16 824 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 TNFRSF25Q93038 417 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 CPVLQ9H3G5 476 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 VCPKMTQ9H867 229 aa24.28■■□□□ 1.48
VPS28-212ENST00000530836 C6orf50Q9HD87 102 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms