RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 METAP2P50579 478 aaKnown RBP eCLIP16.29■□□□□ 0.2
USF1-209ENST00000529476 RCAN1P53805 252 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 LACTBP83111 547 aaPredicted RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 CAP1Q01518 475 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 ANKRD1Q15327 319 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 CCDC174Q6PII3 467 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 CMTR1Q8N1G2 835 aaKnown RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 SPATC1LQ9H0A9 340 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 RANBP17Q9H2T7 1088 aaKnown RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 JMJD4Q9H9V9 463 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 RAVER2Q9HCJ3 691 aaKnown RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 FAM217BQ9NTX9 383 aaPredicted RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 ZNF214Q9UL59 606 aaPredicted RBP16.29■□□□□ 0.2
USF1-209ENST00000529476 SMCHD1A6NHR9 2005 aa16.29■□□□□ 0.2
USF1-209ENST00000529476 NID2Q14112 1375 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 ZNF536O15090 1300 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 CYTH3O43739 400 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 FDX1P10109 184 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 CTGFP29279 349 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 STAT3P40763 770 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 SLC4A3P48751 1232 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 GNAQP50148 359 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 STK3Q13188 491 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 CDC37Q16543 378 aaPredicted RBP16.28■□□□□ 0.2
USF1-209ENST00000529476 TMTC3Q6ZXV5 915 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 SRBD1Q8N5C6 995 aaKnown RBP16.28■□□□□ 0.2
USF1-209ENST00000529476 CD99L2Q8TCZ2 262 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 ZNF274Q96GC6 653 aaPredicted RBP16.28■□□□□ 0.2
USF1-209ENST00000529476 MOV10L1Q9BXT6 1211 aaKnown RBP16.28■□□□□ 0.2
USF1-209ENST00000529476 ARHGAP39Q9C0H5 1083 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 PORCNQ9H237 461 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 RIOX1Q9H6W3 641 aa16.28■□□□□ 0.2
USF1-209ENST00000529476 RBM28Q9NW13 759 aaKnown RBP16.28■□□□□ 0.2
USF1-209ENST00000529476 ATP2A1O14983 1001 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 TAL1P17542 331 aaPredicted RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 ADD1P35611 737 aaKnown RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 CCT2P78371 535 aaKnown RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 CCNA1P78396 465 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 SNRNP48Q6IEG0 339 aaKnown RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 CCDC82Q8N4S0 544 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 PIBF1Q8WXW3 757 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 AGBL1Q96MI9 1066 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 LZTS2Q9BRK4 669 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 TEX13BQ9BXU2 312 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 EFCC1Q9HA90 598 aa16.27■□□□□ 0.2
USF1-209ENST00000529476 NCOA5Q9HCD5 579 aaKnown RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 COLQQ9Y215 455 aaPredicted RBP16.27■□□□□ 0.2
USF1-209ENST00000529476 LARGE1O95461 756 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 OAZ1P54368 228 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 KIF22Q14807 665 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 PPP2R5BQ15173 497 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 QRICH1Q2TAL8 776 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 RIOX2Q8IUF8 465 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 MTMR8Q96EF0 704 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 ERO1AQ96HE7 468 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 PIGSQ96S52 555 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 SPZ1Q9BXG8 430 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 RIPK3Q9Y572 518 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 TRIM17Q9Y577 477 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 DOCK3Q8IZD9 2030 aa16.26■□□□□ 0.19
USF1-209ENST00000529476 HTTP42858 3142 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 PLXNB2O15031 1838 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 CCDC196A0A1B0GTZ2 297 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 ICAM1P05362 532 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 ERCC3P19447 782 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 EN2P19622 333 aaPredicted RBP16.25■□□□□ 0.19
USF1-209ENST00000529476 SMARCA1P28370 1054 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 PSMC4P43686 418 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 FCGRTP55899 365 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 FUT2Q10981 343 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 ME3Q16798 604 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 WDR78Q5VTH9 848 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 NCAPG2Q86XI2 1143 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 HOMER1Q86YM7 354 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 CCAR1Q8IX12 1150 aaKnown RBP16.25■□□□□ 0.19
USF1-209ENST00000529476 SHCBP1Q8NEM2 672 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 TRIM47Q96LD4 638 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 SLKQ9H2G2 1235 aaPredicted RBP16.25■□□□□ 0.19
USF1-209ENST00000529476 CCPG1Q9ULG6 757 aa16.25■□□□□ 0.19
USF1-209ENST00000529476 CNTNAP5Q8WYK1 1306 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 hCG_1642624A0A1W2PR95 340 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 ZBTB5O15062 677 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 ST18O60284 1047 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 PFKFB2O60825 505 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 PPP1R11O60927 126 aaPredicted RBP16.24■□□□□ 0.19
USF1-209ENST00000529476 CD2BP2O95400 341 aaKnown RBP16.24■□□□□ 0.19
USF1-209ENST00000529476 FMNL1O95466 1100 aaPredicted RBP16.24■□□□□ 0.19
USF1-209ENST00000529476 SLC25A27O95847 323 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 MAPK4P31152 587 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 SCRN1Q12765 414 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 OTOP1Q7RTM1 612 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 NECAB1Q8N987 351 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 HOMER2Q9NSB8 354 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 LIMCH1Q9UPQ0 1083 aa16.24■□□□□ 0.19
USF1-209ENST00000529476 TNPO2O14787 897 aaKnown RBP16.23■□□□□ 0.19
USF1-209ENST00000529476 PPFIA3O75145 1194 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 ALAS1P13196 640 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 NTRK3Q16288 839 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 USH1GQ495M9 461 aa16.23■□□□□ 0.19
USF1-209ENST00000529476 GPR142Q7Z601 462 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms