RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 NONOQ15233 471 aaKnown RBP eCLIP23.58■■□□□ 1.37
VPS28-209ENST00000528142 PPP1R18Q6NYC8 613 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 BPIFA3Q9BQP9 254 aa23.58■■□□□ 1.37
VPS28-209ENST00000528142 NAT10Q9H0A0 1025 aaKnown RBP23.58■■□□□ 1.37
VPS28-209ENST00000528142 MYH4Q9Y623 1939 aa23.58■■□□□ 1.36
VPS28-209ENST00000528142 SHTN1A0MZ66 631 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 ESPNB1AK53 854 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 F5H6K3 240 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 TBC1D12O60347 775 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 MMP14P50281 582 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 KLRC3Q07444 240 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 ZRSR1Q15695 479 aaKnown RBP23.57■■□□□ 1.36
VPS28-209ENST00000528142 ARHGAP27Q6ZUM4 889 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 PDILTQ8N807 584 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 MYOZ2Q9NPC6 264 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 RRAGDQ9NQL2 400 aaPredicted RBP23.57■■□□□ 1.36
VPS28-209ENST00000528142 SYNPO2Q9UMS6 1093 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 PCDHA5Q9Y5H7 936 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 SBF1O95248 1867 aa23.57■■□□□ 1.36
VPS28-209ENST00000528142 ZNF280AP59817 542 aaPredicted RBP23.56■■□□□ 1.36
VPS28-209ENST00000528142 NBPF9Q3BBW0 867 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 REXO1Q8N1G1 1221 aaKnown RBP23.56■■□□□ 1.36
VPS28-209ENST00000528142 GMCL1Q96IK5 515 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 TMEM39BQ9GZU3 492 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 CCDC39Q9UFE4 941 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 HOOK1Q9UJC3 728 aaKnown RBP23.56■■□□□ 1.36
VPS28-209ENST00000528142 FZD9O00144 591 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 MYO1BO43795 1136 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 ADCY7P51828 1080 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 POSTNQ15063 836 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 KANK3Q6NY19 840 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 CDAN1Q8IWY9 1227 aa23.56■■□□□ 1.36
VPS28-209ENST00000528142 A0A1W2PRG0 241 aa23.55■■□□□ 1.36
VPS28-209ENST00000528142 NDUFB10O96000 172 aa23.55■■□□□ 1.36
VPS28-209ENST00000528142 RPS12P25398 132 aaKnown RBP23.55■■□□□ 1.36
VPS28-209ENST00000528142 NT5DC1Q5TFE4 455 aa23.55■■□□□ 1.36
VPS28-209ENST00000528142 TMEM60Q9H2L4 133 aa23.55■■□□□ 1.36
VPS28-209ENST00000528142 BIN2Q9UBW5 565 aaPredicted RBP23.55■■□□□ 1.36
VPS28-209ENST00000528142 GOLGA6L19H0YKK7 550 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 SLFN14P0C7P3 912 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 LONP1P36776 959 aaKnown RBP23.54■■□□□ 1.36
VPS28-209ENST00000528142 SARSP49591 514 aaKnown RBP23.54■■□□□ 1.36
VPS28-209ENST00000528142 RIC8AQ9NPQ8 531 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 TMEM260Q9NX78 707 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 LAD1O00515 517 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 RAD21O60216 631 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 PRR29P0C7W0 189 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 MAP3K10Q02779 954 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 JAKMIP3Q5VZ66 844 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 SH3RF1Q7Z6J0 888 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 NEK8Q86SG6 692 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 ZSCAN30Q86W11 494 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 DHX58Q96C10 678 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 ZNF541Q9H0D2 1346 aa23.54■■□□□ 1.36
VPS28-209ENST00000528142 BECN2A8MW95 431 aa23.53■■□□□ 1.36
VPS28-209ENST00000528142 PRPHP41219 470 aa23.53■■□□□ 1.36
VPS28-209ENST00000528142 SARM1Q6SZW1 724 aa23.53■■□□□ 1.36
VPS28-209ENST00000528142 AOPEPQ8N6M6 819 aa23.53■■□□□ 1.36
VPS28-209ENST00000528142 TBCKQ8TEA7 893 aa23.53■■□□□ 1.36
VPS28-209ENST00000528142 DICER1Q9UPY3 1922 aaKnown RBP23.53■■□□□ 1.36
VPS28-209ENST00000528142 CLK2P49760 499 aaKnown RBP23.52■■□□□ 1.36
VPS28-209ENST00000528142 QRICH1Q2TAL8 776 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 ISM2Q6H9L7 571 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 PLA2G4DQ86XP0 818 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 GRAMD1CQ8IYS0 662 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 SPATA20Q8TB22 786 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 E2F4Q16254 413 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 LETM2Q2VYF4 491 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 DTHD1Q6ZMT9 781 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 NUP88Q99567 741 aaPredicted RBP23.52■■□□□ 1.36
VPS28-209ENST00000528142 ZBTB21Q9ULJ3 1066 aa23.52■■□□□ 1.36
VPS28-209ENST00000528142 EDIL3O43854 480 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 EGFRP00533 1210 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 BMP6P22004 513 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 ZNF75DP51815 510 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 ORC2Q13416 577 aaPredicted RBP23.51■■□□□ 1.35
VPS28-209ENST00000528142 BTNL9Q6UXG8 535 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 PAGE5Q96GU1 130 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.51■■□□□ 1.35
VPS28-209ENST00000528142 MAN1B1Q9UKM7 699 aa23.51■■□□□ 1.35
VPS28-209ENST00000528142 CCNT1O60563 726 aaKnown RBP23.5■■□□□ 1.35
VPS28-209ENST00000528142 PTMAP06454 111 aaKnown RBP23.5■■□□□ 1.35
VPS28-209ENST00000528142 BMP3P12645 472 aa23.5■■□□□ 1.35
VPS28-209ENST00000528142 CDC37Q16543 378 aaPredicted RBP23.5■■□□□ 1.35
VPS28-209ENST00000528142 MIGA2Q7L4E1 593 aa23.5■■□□□ 1.35
VPS28-209ENST00000528142 DPF2Q92785 391 aa23.5■■□□□ 1.35
VPS28-209ENST00000528142 PYM1Q9BRP8 204 aaKnown RBP23.5■■□□□ 1.35
VPS28-209ENST00000528142 TMX2Q9Y320 296 aa23.5■■□□□ 1.35
VPS28-209ENST00000528142 ECE1P42892 770 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 NCAPHQ15003 741 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 ACER1Q8TDN7 264 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 CCDC34Q96HJ3 373 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 TRIM5Q9C035 493 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 ARHGEF10LQ9HCE6 1279 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 LMNB1P20700 586 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 CAP2P40123 477 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 GMPSP49915 693 aaPredicted RBP23.49■■□□□ 1.35
VPS28-209ENST00000528142 MRPL12P52815 198 aaKnown RBP23.49■■□□□ 1.35
VPS28-209ENST00000528142 IQUBQ8NA54 791 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 CUL5Q93034 780 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms