RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TBX21Q9UL17 535 aa28.09■■■□□ 2.09
CPSF1-202ENST00000527827 PRUNE2Q8WUY3 3088 aa28.09■■■□□ 2.09
CPSF1-202ENST00000527827 C6orf222P0C671 652 aaPredicted RBP28.08■■■□□ 2.09
CPSF1-202ENST00000527827 CDK7P50613 346 aa28.08■■■□□ 2.09
CPSF1-202ENST00000527827 SLFN13Q68D06 897 aa28.08■■■□□ 2.09
CPSF1-202ENST00000527827 ARMCX2Q7L311 632 aa28.08■■■□□ 2.09
CPSF1-202ENST00000527827 SEC62Q99442 399 aaKnown RBP28.08■■■□□ 2.09
CPSF1-202ENST00000527827 KATNBL1Q9H079 304 aa28.08■■■□□ 2.09
CPSF1-202ENST00000527827 ELP1O95163 1332 aa28.08■■■□□ 2.09
CPSF1-202ENST00000527827 TMEM265A0A087WTH1 108 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 TIMP1P01033 207 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 ASGR1P07306 291 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 BMP3P12645 472 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 GJA9P57773 515 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 GLT1D1Q96MS3 346 aa28.07■■■□□ 2.08
CPSF1-202ENST00000527827 TSPY3P0CV98 308 aa28.06■■■□□ 2.08
CPSF1-202ENST00000527827 TSPY8P0CW00 308 aa28.06■■■□□ 2.08
CPSF1-202ENST00000527827 PCSK9Q8NBP7 692 aaKnown RBP28.06■■■□□ 2.08
CPSF1-202ENST00000527827 TMEM232C9JQI7 657 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 FOSL2P15408 326 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 CNTN2Q02246 1040 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 CCDC144CPQ8IYA2 1237 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 HOMER2Q9NSB8 354 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 VCANP13611 3396 aa28.05■■■□□ 2.08
CPSF1-202ENST00000527827 MROH7Q68CQ1 1323 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 TTC41PQ6P2S7 1318 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 HSFX4A0A1B0GTS1 333 aaPredicted RBP28.04■■■□□ 2.08
CPSF1-202ENST00000527827 HSFX3A0A1B0GWH4 333 aaPredicted RBP28.04■■■□□ 2.08
CPSF1-202ENST00000527827 CTAGE5O15320 804 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 FDX1P10109 184 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 TFAP4Q01664 338 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 PDE4BQ07343 736 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 LRRFIP1Q32MZ4 808 aaKnown RBP28.04■■■□□ 2.08
CPSF1-202ENST00000527827 MFSD5Q6N075 450 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 FAM133AQ8N9E0 248 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 PI4K2BQ8TCG2 481 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.04■■■□□ 2.086e-18■■■□□ 16.7
CPSF1-202ENST00000527827 NACAP1Q9BZK3 213 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 SPC25Q9HBM1 224 aa28.04■■■□□ 2.08
CPSF1-202ENST00000527827 ZNF536O15090 1300 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 DNAJB2P25686 324 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 PPARAQ07869 468 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 GNASQ5JWF2 1037 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 C16orf59Q7L2K0 433 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 ACAD9Q9H845 621 aa28.03■■■□□ 2.08
CPSF1-202ENST00000527827 A0A0U1RQG5 324 aaPredicted RBP28.02■■■□□ 2.08
CPSF1-202ENST00000527827 ARVCFO00192 962 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 STAT2P52630 851 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 NKX3-2P78367 333 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 ZMYM1Q5SVZ6 1142 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 OTUD7AQ8TE49 926 aaPredicted RBP28.02■■■□□ 2.08
CPSF1-202ENST00000527827 VTI1AQ96AJ9 217 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 GMCL1Q96IK5 515 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 AGBL1Q96MI9 1066 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 NAPBQ9H115 298 aa28.02■■■□□ 2.08
CPSF1-202ENST00000527827 A1CFQ9NQ94 594 aaKnown RBP28.02■■■□□ 2.08
CPSF1-202ENST00000527827 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.01■■■□□ 2.07
CPSF1-202ENST00000527827 SOWAHBA6NEL2 793 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 GRIN2CQ14957 1233 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 FAM160B2Q86V87 743 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 FAM126BQ8IXS8 530 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 STAG1Q8WVM7 1258 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 RNF146Q9NTX7 359 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 ISY1Q9ULR0 285 aaKnown RBP28.01■■■□□ 2.07
CPSF1-202ENST00000527827 LRRC37A2A6NM11 1700 aa28.01■■■□□ 2.07
CPSF1-202ENST00000527827 ASTN1O14525 1302 aa28■■■□□ 2.07
CPSF1-202ENST00000527827 FOXP2O15409 715 aa28■■■□□ 2.07
CPSF1-202ENST00000527827 SLC3A2P08195 630 aaKnown RBP28■■■□□ 2.07
CPSF1-202ENST00000527827 TMEM240Q5SV17 173 aa28■■■□□ 2.07
CPSF1-202ENST00000527827 CHURC1Q8WUH1 139 aa28■■■□□ 2.07
CPSF1-202ENST00000527827 CHMP4CQ96CF2 233 aa28■■■□□ 2.07
CPSF1-202ENST00000527827 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28■■■□□ 2.07
CPSF1-202ENST00000527827 ERC2O15083 957 aa27.99■■■□□ 2.07
CPSF1-202ENST00000527827 MCCP23508 829 aa27.99■■■□□ 2.07
CPSF1-202ENST00000527827 SLC1A4P43007 532 aa27.99■■■□□ 2.07
CPSF1-202ENST00000527827 BEX3Q00994 111 aa27.99■■■□□ 2.07
CPSF1-202ENST00000527827 PPIGQ13427 754 aaKnown RBP eCLIP27.99■■■□□ 2.072e-13■■□□□ 11.9
CPSF1-202ENST00000527827 FSD1Q9BTV5 496 aa27.99■■■□□ 2.07
CPSF1-202ENST00000527827 PLA2G6O60733 806 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 CSF2RAP15509 400 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 TNFAIP2Q03169 654 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 RASIP1Q5U651 963 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 INCENPQ9NQS7 918 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 GNEQ9Y223 722 aaKnown RBP27.98■■■□□ 2.07
CPSF1-202ENST00000527827 PCDHB15Q9Y5E8 787 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 LCTP09848 1927 aa27.98■■■□□ 2.07
CPSF1-202ENST00000527827 IKQ13123 557 aaPredicted RBP27.97■■■□□ 2.07
CPSF1-202ENST00000527827 TKFCQ3LXA3 575 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 KCTD1Q719H9 257 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 TIFAQ96CG3 184 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 TRERF1Q96PN7 1200 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 PPP1R12CQ9BZL4 782 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 ZNF576Q9H609 170 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 IL17RBQ9NRM6 502 aa27.97■■■□□ 2.07
CPSF1-202ENST00000527827 DDX49Q9Y6V7 483 aaKnown RBP27.97■■■□□ 2.07
CPSF1-202ENST00000527827 SPTBN5Q9NRC6 3674 aaKnown RBP27.97■■■□□ 2.07
CPSF1-202ENST00000527827 ASB14A6NK59 587 aa27.96■■■□□ 2.07
CPSF1-202ENST00000527827 TLR3O15455 904 aaKnown RBP27.96■■■□□ 2.07
CPSF1-202ENST00000527827 CD4P01730 458 aa27.96■■■□□ 2.07
CPSF1-202ENST00000527827 SNAP25P60880 206 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms