RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 SLURP2P0DP57 97 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 ADGRF4Q8IZF3 695 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 REXO1Q8N1G1 1221 aaKnown RBP18.05■□□□□ 0.48
USH1C-204ENST00000526313 AK8Q96MA6 479 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 GPCPD1Q9NPB8 672 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 KCND1Q9NSA2 647 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 NFE2L3Q9Y4A8 694 aa18.05■□□□□ 0.48
USH1C-204ENST00000526313 PPP1R3GB7ZBB8 358 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 CASP1P29466 404 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 TXLNAP40222 546 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 RBM5P52756 815 aaKnown RBP eCLIP18.04■□□□□ 0.48
USH1C-204ENST00000526313 TCP10Q12799 353 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 NAALADL2Q58DX5 795 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 TMC6Q7Z403 805 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 SIAH1Q8IUQ4 282 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 PSMD1Q99460 953 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 KANSL2Q9H9L4 492 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 DISC1Q9NRI5 854 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 MPHOSPH10O00566 681 aaKnown RBP18.04■□□□□ 0.48
USH1C-204ENST00000526313 PPIP5K2O43314 1243 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 C21orf2O43822 256 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 EDIL3O43854 480 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 CD44P16070 742 aaKnown RBP18.04■□□□□ 0.48
USH1C-204ENST00000526313 CERKLQ49MI3 558 aaPredicted RBP18.04■□□□□ 0.48
USH1C-204ENST00000526313 TTBK2Q6IQ55 1244 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 CCDC150Q8NCX0 1101 aa18.04■□□□□ 0.48
USH1C-204ENST00000526313 PDGFDQ9GZP0 370 aaPredicted RBP18.04■□□□□ 0.48
USH1C-204ENST00000526313 PPP1R11O60927 126 aaPredicted RBP18.03■□□□□ 0.48
USH1C-204ENST00000526313 SERPINC1P01008 464 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 OR52Z1P0C646 297 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 CFAP100Q494V2 611 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 ARMCX5Q6P1M9 558 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 VSTM4Q8IW00 320 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 TTLL6Q8N841 843 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 TBCKQ8TEA7 893 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 COA7Q96BR5 231 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 RIC8AQ9NPQ8 531 aa18.03■□□□□ 0.48
USH1C-204ENST00000526313 BIN2Q9UBW5 565 aaPredicted RBP18.03■□□□□ 0.48
USH1C-204ENST00000526313 SKILP12757 684 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 KCNA3P22001 575 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 CDC25AP30304 524 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 ADCY7P51828 1080 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 RTKN2Q8IZC4 609 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 PRMT6Q96LA8 375 aaPredicted RBP18.02■□□□□ 0.48
USH1C-204ENST00000526313 INTS13Q9NVM9 706 aa18.02■□□□□ 0.48
USH1C-204ENST00000526313 CCNT1O60563 726 aaKnown RBP18.02■□□□□ 0.47
USH1C-204ENST00000526313 MYL1P05976 194 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 EEF2P13639 858 aaKnown RBP18.02■□□□□ 0.47
USH1C-204ENST00000526313 CLK2P49760 499 aaKnown RBP18.02■□□□□ 0.47
USH1C-204ENST00000526313 SEMA3FQ13275 785 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 KARSQ15046 597 aaKnown RBP18.02■□□□□ 0.47
USH1C-204ENST00000526313 LETM2Q2VYF4 491 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 CCDC93Q567U6 631 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 SPATA1Q5VX52 437 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 DCAF4Q8WV16 495 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 PRIMPOLQ96LW4 560 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 GMLQ99445 158 aa18.02■□□□□ 0.47
USH1C-204ENST00000526313 TDRD3Q9H7E2 651 aaKnown RBP18.02■□□□□ 0.47
USH1C-204ENST00000526313 ZBTB5O15062 677 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 STAT6P42226 847 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 DNTTIP2Q5QJE6 756 aaKnown RBP18.01■□□□□ 0.47
USH1C-204ENST00000526313 JAKMIP3Q5VZ66 844 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 TMEM179Q6ZVK1 233 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 STAMQ92783 540 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 MTMR9Q96QG7 549 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 KBTBD4Q9NVX7 518 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 TMEM260Q9NX78 707 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 FAM196BA6NMK8 535 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 VIL1P09327 827 aaKnown RBP18.01■□□□□ 0.47
USH1C-204ENST00000526313 UBA7P41226 1012 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 KCNJ6P48051 423 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 TRMT44Q8IYL2 757 aaKnown RBP18.01■□□□□ 0.47
USH1C-204ENST00000526313 SLC16A10Q8TF71 515 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 VPS33BQ9H267 617 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 BLZF1Q9H2G9 400 aa18.01■□□□□ 0.47
USH1C-204ENST00000526313 SAMSN1Q9NSI8 373 aaKnown RBP18.01■□□□□ 0.47
USH1C-204ENST00000526313 PP2D1A8MPX8 630 aa18■□□□□ 0.47
USH1C-204ENST00000526313 USP17L10C9JJH3 530 aa18■□□□□ 0.47
USH1C-204ENST00000526313 SHROOM1Q2M3G4 852 aaPredicted RBP18■□□□□ 0.47
USH1C-204ENST00000526313 CDKAL1Q5VV42 579 aa18■□□□□ 0.47
USH1C-204ENST00000526313 RRAGBQ5VZM2 374 aa18■□□□□ 0.47
USH1C-204ENST00000526313 RSBN1LQ6PCB5 846 aaPredicted RBP18■□□□□ 0.47
USH1C-204ENST00000526313 KCTD1Q719H9 257 aa18■□□□□ 0.47
USH1C-204ENST00000526313 APTXQ7Z2E3 356 aaKnown RBP18■□□□□ 0.47
USH1C-204ENST00000526313 ZSCAN29Q8IWY8 852 aaPredicted RBP18■□□□□ 0.47
USH1C-204ENST00000526313 IGSF22Q8N9C0 903 aa18■□□□□ 0.47
USH1C-204ENST00000526313 CUEDC2Q9H467 287 aa18■□□□□ 0.47
USH1C-204ENST00000526313 RMND1Q9NWS8 449 aa18■□□□□ 0.47
USH1C-204ENST00000526313 ATP2B2Q01814 1243 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 TBX2Q13207 712 aaPredicted RBP17.99■□□□□ 0.47
USH1C-204ENST00000526313 CCDC96Q2M329 555 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 ZNF658Q5TYW1 1059 aaPredicted RBP17.99■□□□□ 0.47
USH1C-204ENST00000526313 MAGEF1Q9HAY2 307 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 RPN1P04843 607 aaKnown RBP17.99■□□□□ 0.47
USH1C-204ENST00000526313 KCNB1Q14721 858 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 NR1I3Q14994 352 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 SEPT2Q15019 361 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 SLFN13Q68D06 897 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 GMCL1P1Q8NEA9 526 aa17.99■□□□□ 0.47
USH1C-204ENST00000526313 LRRC15Q8TF66 581 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms