RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 USP38Q8NB14 1042 aa30.92■■■□□ 2.54
PVT1-219ENST00000523427 TIFAQ96CG3 184 aa30.92■■■□□ 2.54
PVT1-219ENST00000523427 FGD4Q96M96 766 aa30.92■■■□□ 2.54
PVT1-219ENST00000523427 ELP1O95163 1332 aa30.92■■■□□ 2.54
PVT1-219ENST00000523427 IGKV6D-41A0A0C4DH26 115 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 M0R2C6 588 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 ACRP10323 421 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 SLFN13Q68D06 897 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 CCDC144CPQ8IYA2 1237 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 PPM1EQ8WY54 764 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 MTMR4Q9NYA4 1195 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 FBXO40Q9UH90 709 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 MROH7Q68CQ1 1323 aa30.91■■■□□ 2.54
PVT1-219ENST00000523427 GREB1LQ9C091 1923 aaPredicted RBP30.9■■■□□ 2.54
PVT1-219ENST00000523427 CSF2RAP15509 400 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 CDK7P50613 346 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 BEX3Q00994 111 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 CNTN2Q02246 1040 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 PPIGQ13427 754 aaKnown RBP eCLIP30.9■■■□□ 2.544e-7■■■□□ 15
PVT1-219ENST00000523427 C16orf59Q7L2K0 433 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 CHST13Q8NET6 341 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 GPATCH3Q96I76 525 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 ZNF287Q9HBT7 754 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 RCAN3Q9UKA8 241 aa30.9■■■□□ 2.54
PVT1-219ENST00000523427 A0A0U1RQG5 324 aaPredicted RBP30.89■■■□□ 2.54
PVT1-219ENST00000523427 ARVCFO00192 962 aa30.89■■■□□ 2.54
PVT1-219ENST00000523427 TTLL1O95922 423 aa30.89■■■□□ 2.54
PVT1-219ENST00000523427 CST5P28325 142 aaPredicted RBP30.89■■■□□ 2.54
PVT1-219ENST00000523427 PBX2P40425 430 aa30.89■■■□□ 2.54
PVT1-219ENST00000523427 GJA9P57773 515 aa30.89■■■□□ 2.54
PVT1-219ENST00000523427 IKQ13123 557 aaPredicted RBP30.89■■■□□ 2.54
PVT1-219ENST00000523427 TTC28Q96AY4 2481 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 TMEM232C9JQI7 657 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 TSPY3P0CV98 308 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 TSPY8P0CW00 308 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 BMP3P12645 472 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 TMEM240Q5SV17 173 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 DIEXFQ68CQ4 756 aaKnown RBP30.88■■■□□ 2.53
PVT1-219ENST00000523427 MKL1Q969V6 931 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 MCM3APO60318 1980 aa30.88■■■□□ 2.53
PVT1-219ENST00000523427 GNAT2P19087 354 aa30.87■■■□□ 2.53
PVT1-219ENST00000523427 CCDC174Q6PII3 467 aa30.87■■■□□ 2.53
PVT1-219ENST00000523427 IFNL3Q8IZI9 196 aa30.87■■■□□ 2.53
PVT1-219ENST00000523427 TMEM199Q8N511 208 aa30.87■■■□□ 2.53
PVT1-219ENST00000523427 UPF3AQ9H1J1 476 aaKnown RBP30.87■■■□□ 2.53
PVT1-219ENST00000523427 C11orf97A0A1B0GVM6 126 aaPredicted RBP30.86■■■□□ 2.53
PVT1-219ENST00000523427 TLR3O15455 904 aaKnown RBP30.86■■■□□ 2.53
PVT1-219ENST00000523427 CYP2C18P33260 490 aa30.86■■■□□ 2.53
PVT1-219ENST00000523427 ZNF365Q70YC5 407 aa30.86■■■□□ 2.53
PVT1-219ENST00000523427 SYMPKQ92797 1274 aaKnown RBP30.86■■■□□ 2.53
PVT1-219ENST00000523427 SEC62Q99442 399 aaKnown RBP30.86■■■□□ 2.53
PVT1-219ENST00000523427 PBX4Q9BYU1 374 aa30.86■■■□□ 2.53
PVT1-219ENST00000523427 PRDM6Q9NQX0 595 aa30.86■■■□□ 2.53
PVT1-219ENST00000523427 DDX49Q9Y6V7 483 aaKnown RBP30.86■■■□□ 2.53
PVT1-219ENST00000523427 MYH4Q9Y623 1939 aa30.86■■■□□ 2.53
PVT1-219ENST00000523427 PATL2C9JE40 543 aaKnown RBP30.85■■■□□ 2.53
PVT1-219ENST00000523427 ZFYP08048 801 aaPredicted RBP30.85■■■□□ 2.53
PVT1-219ENST00000523427 OAZ1P54368 228 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 TFAP4Q01664 338 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 TNFAIP2Q03169 654 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 FAM126BQ8IXS8 530 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 GMCL1P1Q8NEA9 526 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 AGBL1Q96MI9 1066 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 ACAD9Q9H845 621 aa30.85■■■□□ 2.53
PVT1-219ENST00000523427 PTGS1P23219 599 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 SNAP25P60880 206 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 CXCL17Q6UXB2 119 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 NEDD1Q8NHV4 660 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 PRDM12Q9H4Q4 367 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 RNF146Q9NTX7 359 aa30.84■■■□□ 2.53
PVT1-219ENST00000523427 CTAGE5O15320 804 aa30.83■■■□□ 2.53
PVT1-219ENST00000523427 PDE4BQ07343 736 aa30.83■■■□□ 2.53
PVT1-219ENST00000523427 DHX30Q7L2E3 1194 aaKnown RBP eCLIP30.83■■■□□ 2.53
PVT1-219ENST00000523427 GAS2L1Q99501 681 aaPredicted RBP30.83■■■□□ 2.53
PVT1-219ENST00000523427 NACAP1Q9BZK3 213 aa30.83■■■□□ 2.53
PVT1-219ENST00000523427 KATNBL1Q9H079 304 aa30.83■■■□□ 2.53
PVT1-219ENST00000523427 A1CFQ9NQ94 594 aaKnown RBP30.83■■■□□ 2.53
PVT1-219ENST00000523427 MTMR7Q9Y216 660 aa30.83■■■□□ 2.53
PVT1-219ENST00000523427 SOWAHBA6NEL2 793 aa30.82■■■□□ 2.52
PVT1-219ENST00000523427 ALAS1P13196 640 aa30.82■■■□□ 2.52
PVT1-219ENST00000523427 MCCP23508 829 aa30.82■■■□□ 2.52
PVT1-219ENST00000523427 STAT2P52630 851 aa30.82■■■□□ 2.52
PVT1-219ENST00000523427 FAM133AQ8N9E0 248 aa30.82■■■□□ 2.52
PVT1-219ENST00000523427 MYO9BQ13459 2157 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 SLC1A4P43007 532 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 PSRC1Q6PGN9 363 aaPredicted RBP30.81■■■□□ 2.52
PVT1-219ENST00000523427 EEPD1Q7L9B9 569 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 CHURC1Q8WUH1 139 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 TRERF1Q96PN7 1200 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 NAPBQ9H115 298 aa30.81■■■□□ 2.52
PVT1-219ENST00000523427 ASTN1O14525 1302 aa30.8■■■□□ 2.52
PVT1-219ENST00000523427 DYNC1LI2O43237 492 aaPredicted RBP30.8■■■□□ 2.52
PVT1-219ENST00000523427 SLC3A2P08195 630 aaKnown RBP30.8■■■□□ 2.52
PVT1-219ENST00000523427 TJAP1Q5JTD0 557 aa30.8■■■□□ 2.52
PVT1-219ENST00000523427 KCTD1Q719H9 257 aa30.8■■■□□ 2.52
PVT1-219ENST00000523427 AP5M1Q9H0R1 490 aa30.8■■■□□ 2.52
PVT1-219ENST00000523427 DCTPP1Q9H773 170 aa30.8■■■□□ 2.52
PVT1-219ENST00000523427 SPTBN5Q9NRC6 3674 aaKnown RBP30.8■■■□□ 2.52
PVT1-219ENST00000523427 FDX1P10109 184 aa30.79■■■□□ 2.52
PVT1-219ENST00000523427 PPARAQ07869 468 aa30.79■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms