RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 A0A0G2JMZ2 1700 aa18.84■□□□□ 0.61
LSM1-204ENST00000522515 COL11A1P12107 1806 aaPredicted RBP18.83■□□□□ 0.61
LSM1-204ENST00000522515 ZBED4O75132 1171 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 FDX1P10109 184 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 AKAP17AQ02040 695 aaKnown RBP18.83■□□□□ 0.6
LSM1-204ENST00000522515 TAF1CQ15572 869 aaPredicted RBP18.83■□□□□ 0.6
LSM1-204ENST00000522515 PKN1Q16512 942 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 CCDC174Q6PII3 467 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 SPRYD3Q8NCJ5 442 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 INTS4Q96HW7 963 aaKnown RBP18.83■□□□□ 0.6
LSM1-204ENST00000522515 ORC3Q9UBD5 711 aaPredicted RBP18.83■□□□□ 0.6
LSM1-204ENST00000522515 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.83■□□□□ 0.6
LSM1-204ENST00000522515 ZNF536O15090 1300 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 STK36Q9NRP7 1315 aa18.83■□□□□ 0.6
LSM1-204ENST00000522515 PNMA6FA0A0J9YX94 578 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 PPP1R11O60927 126 aaPredicted RBP18.82■□□□□ 0.6
LSM1-204ENST00000522515 TMEM132BQ14DG7 1078 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 CPXCR1Q8N123 301 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 PAGR1Q9BTK6 254 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 RAVER2Q9HCJ3 691 aaKnown RBP18.82■□□□□ 0.6
LSM1-204ENST00000522515 BTBD7Q9P203 1132 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 RBPJLQ9UBG7 517 aa18.82■□□□□ 0.6
LSM1-204ENST00000522515 SEC63Q9UGP8 760 aaKnown RBP18.82■□□□□ 0.6
LSM1-204ENST00000522515 CNMDO75829 334 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 DEXIO95424 95 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 HSP90AA1P07900 732 aaKnown RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 MB21D1Q8N884 522 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 TXNRD2Q9NNW7 524 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 RBM27Q9P2N5 1060 aaKnown RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 ZNF214Q9UL59 606 aaPredicted RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 SMC3Q9UQE7 1217 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 CTDP1Q9Y5B0 961 aaPredicted RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 MYH6P13533 1939 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 SCG2P13521 617 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 TAL1P17542 331 aaPredicted RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 GJB2P29033 226 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 HMGN5P82970 282 aaKnown RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 CRHR2Q13324 411 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 PFKFB3Q16875 520 aaPredicted RBP18.81■□□□□ 0.6
LSM1-204ENST00000522515 AGBL1Q96MI9 1066 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 AIFM3Q96NN9 605 aa18.81■□□□□ 0.6
LSM1-204ENST00000522515 ADGRA2Q96PE1 1338 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 CA12O43570 354 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 ALDH1A1P00352 501 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 ICAM1P05362 532 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 GCLCP48506 637 aaPredicted RBP18.8■□□□□ 0.6
LSM1-204ENST00000522515 FBXO11Q86XK2 927 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 DNAJC5GQ8N7S2 189 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 GPKOWQ92917 476 aaPredicted RBP eCLIP18.8■□□□□ 0.6
LSM1-204ENST00000522515 COA7Q96BR5 231 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 AMNQ9BXJ7 453 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 ZFYVE28Q9HCC9 887 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 RABGAP1Q9Y3P9 1069 aa18.8■□□□□ 0.6
LSM1-204ENST00000522515 ATP2A1O14983 1001 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 PLS1Q14651 629 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 Q3C1V9 767 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 USH1GQ495M9 461 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 WWC2Q6AWC2 1192 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 HEATR3Q7Z4Q2 680 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 ANKRD13CQ8N6S4 541 aa18.79■□□□□ 0.6
LSM1-204ENST00000522515 GTF3C2Q8WUA4 911 aaPredicted RBP18.79■□□□□ 0.6
LSM1-204ENST00000522515 TLR2O60603 784 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 STAT3P40763 770 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 OAZ1P54368 228 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 SNRNP48Q6IEG0 339 aaKnown RBP18.78■□□□□ 0.6
LSM1-204ENST00000522515 FAM184AQ8NB25 1140 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 ALG1Q9BT22 464 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 TEX13BQ9BXU2 312 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 R3HDMLQ9H3Y0 253 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 RNF186Q9NXI6 227 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 CPA4Q9UI42 421 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 CCPG1Q9ULG6 757 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 RIPK3Q9Y572 518 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 PCDHA1Q9Y5I3 950 aa18.78■□□□□ 0.6
LSM1-204ENST00000522515 PCNTO95613 3336 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 TRPA1O75762 1119 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 ERVK-9P63128 1117 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 ERVK-24P63145 666 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 TYW1BQ6NUM6 668 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 SHISA4Q96DD7 197 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 SPATC1LQ9H0A9 340 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 GJB4Q9NTQ9 266 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 BARHL2Q9NY43 387 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 VPS54Q9P1Q0 977 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 MORF4L1Q9UBU8 362 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 SMCHD1A6NHR9 2005 aa18.77■□□□□ 0.6
LSM1-204ENST00000522515 STXBP3O00186 592 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 BCRP11274 1271 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 C17orf99Q6UX52 265 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 WASF1Q92558 559 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 CEP350Q5VT06 3117 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 hCG_1984214I3L0E3 225 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 ALAS1P13196 640 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 FOSBP53539 338 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 FAM110CQ1W6H9 321 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 RIOX2Q8IUF8 465 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 ZNF713Q8N859 430 aaPredicted RBP18.76■□□□□ 0.59
LSM1-204ENST00000522515 GPRC5AQ8NFJ5 357 aa18.76■□□□□ 0.59
LSM1-204ENST00000522515 MOV10L1Q9BXT6 1211 aaKnown RBP18.76■□□□□ 0.59
LSM1-204ENST00000522515 HOMER2Q9NSB8 354 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms