RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 CCDC12Q8WUD4 166 aaPredicted RBP15.06■□□□□ 0
CPNE3-205ENST00000522240 OPTNQ96CV9 577 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 PIGSQ96S52 555 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 RPAP3Q9H6T3 665 aaPredicted RBP15.06■□□□□ 0
CPNE3-205ENST00000522240 BARHL2Q9NY43 387 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 PRR12Q9ULL5 1215 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 MYPNQ86TC9 1320 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 A0A0G2JMZ2 1700 aa15.06■□□□□ 0
CPNE3-205ENST00000522240 MYH15Q9Y2K3 1946 aa15.05■□□□□ 0
CPNE3-205ENST00000522240 ESYT2A0FGR8 921 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 STXBP3O00186 592 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 IRF6O14896 467 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 MMP1P03956 469 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 FDX1P10109 184 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 FOSBP53539 338 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 TRAF1Q13077 416 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 RESTQ13127 1097 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 CDC37Q16543 378 aaPredicted RBP15.05■□□□□ -0
CPNE3-205ENST00000522240 CST9Q5W186 159 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 SLC10A4Q96EP9 437 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 SLF1Q9BQI6 1058 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 PHF20Q9BVI0 1012 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 RANBP17Q9H2T7 1088 aaKnown RBP15.05■□□□□ -0
CPNE3-205ENST00000522240 ZSCAN16Q9H4T2 348 aaPredicted RBP15.05■□□□□ -0
CPNE3-205ENST00000522240 VPS54Q9P1Q0 977 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 ATP6V1DQ9Y5K8 247 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 RLFQ13129 1914 aa15.05■□□□□ -0
CPNE3-205ENST00000522240 BAZ2BQ9UIF8 2168 aaKnown RBP15.05■□□□□ -0
CPNE3-205ENST00000522240 CALML3P27482 149 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 CTCFP49711 727 aaPredicted RBP15.04■□□□□ -0
CPNE3-205ENST00000522240 GUCY1B3Q02153 619 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 KIF23Q02241 960 aaPredicted RBP15.04■□□□□ -0
CPNE3-205ENST00000522240 SAFBQ15424 915 aaKnown RBP eCLIP15.04■□□□□ -0
CPNE3-205ENST00000522240 QRICH1Q2TAL8 776 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 GALNT17Q6IS24 598 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 CLEC17AQ6ZS10 378 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 HEATR3Q7Z4Q2 680 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 PRPF38AQ8NAV1 312 aaKnown RBP15.04■□□□□ -0
CPNE3-205ENST00000522240 DAGLBQ8NCG7 672 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 PIBF1Q8WXW3 757 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 TNPO1Q92973 898 aaKnown RBP15.04■□□□□ -0
CPNE3-205ENST00000522240 SHISA4Q96DD7 197 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 WNK4Q96J92 1243 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 TANGO6Q9C0B7 1094 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 VAT1LQ9HCJ6 419 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 BRMS1Q9HCU9 246 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 PPP1R9AQ9ULJ8 1098 aa15.04■□□□□ -0
CPNE3-205ENST00000522240 USP17L15C9J2P7 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L13C9JLJ4 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L11C9JVI0 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L18D6R9N7 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L22D6RA61 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L17D6RBQ6 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L19D6RCP7 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L20D6RJB6 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 FOXN1O15353 648 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 ZBTB48P10074 688 aaPredicted RBP15.03■□□□□ -0
CPNE3-205ENST00000522240 GJA5P36382 358 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 USP17L24Q0WX57 530 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 SNAPC2Q13487 334 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 DGKZQ13574 1117 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 OTUD7BQ6GQQ9 843 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 BRAPQ7Z569 592 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 TEX2Q8IWB9 1127 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 GPKOWQ92917 476 aaPredicted RBP eCLIP15.03■□□□□ -0
CPNE3-205ENST00000522240 KIFC2Q96AC6 838 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 GJB4Q9NTQ9 266 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 FBXO28Q9NVF7 368 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 PNMA2Q9UL42 364 aa15.03■□□□□ -0
CPNE3-205ENST00000522240 RASSF10A6NK89 507 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 PPP1R11O60927 126 aaPredicted RBP15.02■□□□□ -0
CPNE3-205ENST00000522240 FLOT1O75955 427 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 KRT2P35908 639 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 VEGFBP49765 207 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 NAPAP54920 295 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 TYW1BQ6NUM6 668 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 CATSPERGQ6ZRH7 1159 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 FASTKD5Q7L8L6 764 aaKnown RBP15.02■□□□□ -0
CPNE3-205ENST00000522240 FBXO11Q86XK2 927 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 DIS3L2Q8IYB7 885 aaKnown RBP15.02■□□□□ -0
CPNE3-205ENST00000522240 AMNQ9BXJ7 453 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 ZMYND12Q9H0C1 365 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 FOXP1Q9H334 677 aaPredicted RBP15.02■□□□□ -0
CPNE3-205ENST00000522240 WBP1LQ9NX94 342 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 AGTPBP1Q9UPW5 1226 aa15.02■□□□□ -0
CPNE3-205ENST00000522240 RBBP6Q7Z6E9 1792 aaKnown RBP15.02□□□□□ -0.01
CPNE3-205ENST00000522240 U2AF2P26368 475 aaKnown RBP eCLIP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 HOXA7P31268 230 aaPredicted RBP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 HUNKP57058 714 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 NLRP5P59047 1200 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 PABPC4Q13310 644 aaKnown RBP eCLIP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 NPY5RQ15761 445 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 FOXD4L5Q5VV16 416 aaPredicted RBP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 MCTP1Q6DN14 999 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 GADL1Q6ZQY3 521 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 ZNF467Q7Z7K2 595 aaPredicted RBP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 FERMT3Q86UX7 667 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 FOXD4L4Q8WXT5 416 aaPredicted RBP15.01□□□□□ -0.01
CPNE3-205ENST00000522240 GBP4Q96PP9 640 aa15.01□□□□□ -0.01
CPNE3-205ENST00000522240 GLT8D2Q9H1C3 349 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms