RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 LIN37Q96GY3 246 aaPredicted RBP7.48□□□□□ -1.21
NUP54-218ENST00000515460 PARP2Q9UGN5 583 aa7.48□□□□□ -1.21
NUP54-218ENST00000515460 RPRD2Q5VT52 1461 aaKnown RBP7.48□□□□□ -1.21
NUP54-218ENST00000515460 ADGRB3O60242 1522 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 RLBP1P12271 317 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 AFMP43652 599 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 CCDC27Q2M243 656 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 DIEXFQ68CQ4 756 aaKnown RBP7.47□□□□□ -1.21
NUP54-218ENST00000515460 FAM196AQ6ZSG2 479 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 HID1Q8IV36 788 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 MFSD4AQ8N468 514 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 MFSD2AQ8NA29 543 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 GAL3ST3Q96A11 431 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 MTFR1LQ9H019 292 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 SEMA3GQ9NS98 782 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 LMCD1Q9NZU5 365 aa7.47□□□□□ -1.21
NUP54-218ENST00000515460 DHX57Q6P158 1386 aaKnown RBP7.46□□□□□ -1.21
NUP54-218ENST00000515460 PTPRUQ92729 1446 aa7.46□□□□□ -1.21
NUP54-218ENST00000515460 GRK4P32298 578 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 DAB2P98082 770 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 MESP2Q0VG99 397 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 TAF7LQ5H9L4 462 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 LCE1DQ5T752 114 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 LETMD1Q6P1Q0 360 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 FAM84AQ96KN4 292 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 NMRK2Q9NPI5 230 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 PCDHB5Q9Y5E4 795 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 SNCAIPQ9Y6H5 919 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 CROCC2H7BZ55 1655 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 NUP155O75694 1391 aa7.46□□□□□ -1.22
NUP54-218ENST00000515460 ADGRL3Q9HAR2 1447 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 SEPT6Q14141 434 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 MAP3K11Q16584 847 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 PRAMEF13Q5VWM6 474 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 MPZL3Q6UWV2 235 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 FAM53CQ9NYF3 392 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 ROCK1Q13464 1354 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 PIK3R4Q99570 1358 aa7.45□□□□□ -1.22
NUP54-218ENST00000515460 DCCP43146 1447 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 ST13P50502 369 aaKnown RBP7.44□□□□□ -1.22
NUP54-218ENST00000515460 TMC4Q7Z404 712 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 CDH24Q86UP0 819 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 UBE2FQ969M7 185 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 KIRREL1Q96J84 757 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 DPH2Q9BQC3 489 aaPredicted RBP7.44□□□□□ -1.22
NUP54-218ENST00000515460 GZF1Q9H116 711 aaPredicted RBP7.44□□□□□ -1.22
NUP54-218ENST00000515460 MRS2Q9HD23 443 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 ZSWIM5Q9P217 1185 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 CAPN6Q9Y6Q1 641 aa7.44□□□□□ -1.22
NUP54-218ENST00000515460 ZNF865P0CJ78 1059 aaPredicted RBP7.43□□□□□ -1.22
NUP54-218ENST00000515460 CAP2P40123 477 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 LIG3P49916 1009 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 LBX1P52954 281 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 TRIM26Q12899 539 aaPredicted RBP7.43□□□□□ -1.22
NUP54-218ENST00000515460 TAF1CQ15572 869 aaPredicted RBP7.43□□□□□ -1.22
NUP54-218ENST00000515460 TMEM67Q5HYA8 995 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 AGMOQ6ZNB7 445 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 NOC4LQ9BVI4 516 aaKnown RBP7.43□□□□□ -1.22
NUP54-218ENST00000515460 MIR1-1HGQ9H1L0 117 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 RNF19AQ9NV58 838 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 ST14Q9Y5Y6 855 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 METP08581 1390 aa7.43□□□□□ -1.22
NUP54-218ENST00000515460 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.42□□□□□ -1.22
NUP54-218ENST00000515460 SORBS3O60504 671 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 CST3P01034 146 aaPredicted RBP7.42□□□□□ -1.22
NUP54-218ENST00000515460 GLI1P08151 1106 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 ZNF326Q5BKZ1 582 aaKnown RBP7.42□□□□□ -1.22
NUP54-218ENST00000515460 MEI1Q5TIA1 1274 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 ZNF746Q6NUN9 644 aaPredicted RBP7.42□□□□□ -1.22
NUP54-218ENST00000515460 PRR23BQ6ZRT6 265 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 FBXO33Q7Z6M2 555 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 CRELD1Q96HD1 420 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 C19orf73Q9NVV2 129 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 C1orf167Q5SNV9 1468 aa7.42□□□□□ -1.22
NUP54-218ENST00000515460 LAMC1P11047 1609 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 PLCH1Q4KWH8 1693 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 GFRA2O00451 464 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 C22orf34Q6ZV56 151 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 SLAMF8Q9P0V8 285 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 TACC3Q9Y6A5 838 aa7.41□□□□□ -1.22
NUP54-218ENST00000515460 PGRP06401 933 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 CYP7A1P22680 504 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 GDNFP39905 211 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 RAP1GAPP47736 663 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 TNK2Q07912 1038 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 SLC17A8Q8NDX2 589 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 JARID2Q92833 1246 aaPredicted RBP7.4□□□□□ -1.22
NUP54-218ENST00000515460 TJP2Q9UDY2 1190 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 VTI1BQ9UEU0 232 aa7.4□□□□□ -1.22
NUP54-218ENST00000515460 CACNA1AO00555 2505 aa7.4□□□□□ -1.23
NUP54-218ENST00000515460 USP32Q8NFA0 1604 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 TRPM2O94759 1503 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 TSNAXIP1Q2TAA8 658 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 SYDE1Q6ZW31 735 aaPredicted RBP7.39□□□□□ -1.23
NUP54-218ENST00000515460 THAP5Q7Z6K1 395 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 FAM161BQ96MY7 647 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 ALPK1Q96QP1 1244 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 DIRC2Q96SL1 478 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 SZT2Q5T011 3432 aa7.39□□□□□ -1.23
NUP54-218ENST00000515460 USP31Q70CQ4 1352 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms