RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ZSCAN22P10073 491 aaPredicted RBP15□□□□□ -0.01
LIMCH1-220ENST00000514190 XBP1P17861 261 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 FOSBP53539 338 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 MOGSQ13724 837 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 TRIM29Q14134 588 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 COG2Q14746 738 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 KRT40Q6A162 431 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 OTUD7BQ6GQQ9 843 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 CATSPERGQ6ZRH7 1159 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 KIFC2Q96AC6 838 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 RANBP17Q9H2T7 1088 aaKnown RBP15□□□□□ -0.01
LIMCH1-220ENST00000514190 BARHL2Q9NY43 387 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 PHIPQ8WWQ0 1821 aa15□□□□□ -0.01
LIMCH1-220ENST00000514190 hCG_1984214I3L0E3 225 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 FLOT1O75955 427 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 ZBTB48P10074 688 aaPredicted RBP14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 FDX1P10109 184 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 HOXA7P31268 230 aaPredicted RBP14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 GTF2A2P52657 109 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 GUCY1B3Q02153 619 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 CDC37Q16543 378 aaPredicted RBP14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 QRICH1Q2TAL8 776 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 WWC2Q6AWC2 1192 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 GADL1Q6ZQY3 521 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 HEATR3Q7Z4Q2 680 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 ZNF713Q8N859 430 aaPredicted RBP14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 GPKOWQ92917 476 aaPredicted RBP eCLIP14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 SHISA4Q96DD7 197 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 RNF186Q9NXI6 227 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 VPS54Q9P1Q0 977 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 PPP1R9AQ9ULJ8 1098 aa14.99□□□□□ -0.01
LIMCH1-220ENST00000514190 STXBP3O00186 592 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 PPP1R11O60927 126 aaPredicted RBP14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 TRPA1O75762 1119 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 CETPP11597 493 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 DSG3P32926 999 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 SNAP25P60880 206 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 MKRN3Q13064 507 aaKnown RBP14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 TREML2Q5T2D2 321 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 GPAT2Q6NUI2 795 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 TYW1BQ6NUM6 668 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 MS4A4AQ96JQ5 239 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 PHF20Q9BVI0 1012 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 HOXC10Q9NYD6 342 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 ADAMTS5Q9UNA0 930 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 KCNJ14Q9UNX9 436 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 AGTPBP1Q9UPW5 1226 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 CASP8AP2Q9UKL3 1982 aa14.98□□□□□ -0.01
LIMCH1-220ENST00000514190 MYPNQ86TC9 1320 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 MMP1P03956 469 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 SREBF2Q12772 1141 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 TRAF1Q13077 416 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 SAFBQ15424 915 aaKnown RBP eCLIP14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 FOXD4L5Q5VV16 416 aaPredicted RBP14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 FBXO11Q86XK2 927 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 CCDC12Q8WUD4 166 aaPredicted RBP14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 FOXD4L4Q8WXT5 416 aaPredicted RBP14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 AMNQ9BXJ7 453 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 SLC38A10Q9HBR0 1119 aa14.97□□□□□ -0.01
LIMCH1-220ENST00000514190 VWA5AO00534 786 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 ZBED4O75132 1171 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 F13A1P00488 732 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 CALML3P27482 149 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 TM4SF4P48230 202 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 NAPAP54920 295 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 NLRP5P59047 1200 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 PABPC4Q13310 644 aaKnown RBP eCLIP14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 NPY5RQ15761 445 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 GALNT17Q6IS24 598 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 PPP1R18Q6NYC8 613 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 CCDC148Q8NFR7 591 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 COA7Q96BR5 231 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 ATG4CQ96DT6 458 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 ZMYND12Q9H0C1 365 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 PNMA2Q9UL42 364 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 PCDHA1Q9Y5I3 950 aa14.96□□□□□ -0.01
LIMCH1-220ENST00000514190 CCL15-CCL14A0A0B4J2E2 113 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 ESYT2A0FGR8 921 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 TESPA1A2RU30 521 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 RESTQ13127 1097 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 CCL15Q16663 113 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 MCTP1Q6DN14 999 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 CCDC174Q6PII3 467 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 FERMT3Q86UX7 667 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 DIS3L2Q8IYB7 885 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 BRI3BPQ8WY22 251 aa14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 TNPO1Q92973 898 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 P2RX7Q99572 595 aaKnown RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 ASCC2Q9H1I8 757 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 ZSCAN16Q9H4T2 348 aaPredicted RBP14.95□□□□□ -0.02
LIMCH1-220ENST00000514190 ZNF536O15090 1300 aa14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 SMCO2A6NFE2 343 aa14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 MANSC4A6NHS7 340 aaPredicted RBP14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 SPDYE16A6NNV3 312 aaPredicted RBP14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 BTBD18B2RXH4 712 aa14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 ICAM1P05362 532 aa14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 OSBPP22059 807 aa14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 U2AF2P26368 475 aaKnown RBP eCLIP14.94□□□□□ -0.02
LIMCH1-220ENST00000514190 GNA11P29992 359 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms