RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 MTCH2Q9Y6C9 303 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 SLC4A7Q9Y6M7 1214 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 PLXNA1Q9UIW2 1896 aa13.18□□□□□ -0.3
DDX41-216ENST00000513562 ASTN1O14525 1302 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 TRANK1O15050 2925 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 SMCHD1A6NHR9 2005 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 ZNF316A6NFI3 1004 aaPredicted RBP13.17□□□□□ -0.3
DDX41-216ENST00000513562 USP17L12C9JPN9 530 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 USP17L21D6R901 530 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 GOLIM4O00461 696 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 CABYRO75952 493 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 CCL23P55773 120 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 BEX3Q00994 111 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 ZKSCAN2Q63HK3 967 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 CXCL17Q6UXB2 119 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 AMOTL1Q8IY63 956 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 CCDC144CPQ8IYA2 1237 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 ANKRD35Q8N283 1001 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 PRPF38AQ8NAV1 312 aaKnown RBP13.17□□□□□ -0.3
DDX41-216ENST00000513562 DNAJC2Q99543 621 aaKnown RBP13.17□□□□□ -0.3
DDX41-216ENST00000513562 SEZ6LQ9BYH1 1024 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 EXOC6BQ9Y2D4 811 aa13.17□□□□□ -0.3
DDX41-216ENST00000513562 GRIN2DO15399 1336 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 ZBED9Q6R2W3 1325 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 GTPBP6O43824 516 aaPredicted RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 NDUFB10O96000 172 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 ATP2A2P16615 1042 aaKnown RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 ITGA7Q13683 1181 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 CEP85Q6P2H3 762 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 RPUSD2Q8IZ73 545 aaKnown RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 TRPV6Q9H1D0 765 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 SLC38A10Q9HBR0 1119 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 C11orf16Q9NQ32 467 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 FBXO40Q9UH90 709 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 COG5Q9UP83 839 aa13.16□□□□□ -0.3
DDX41-216ENST00000513562 GNEQ9Y223 722 aaKnown RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 COL11A1P12107 1806 aaPredicted RBP13.16□□□□□ -0.3
DDX41-216ENST00000513562 NCOR1O75376 2440 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 F5H6K3 240 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 TLL1O43897 1013 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 B4GALT4O60513 344 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 GPR37L1O60883 481 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 ZBED4O75132 1171 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 ADD2P35612 726 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 TNFAIP2Q03169 654 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 KLRC3Q07444 240 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 FSCN1Q16658 493 aaKnown RBP13.15□□□□□ -0.3
DDX41-216ENST00000513562 SLFNL1Q499Z3 407 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 TLK2Q86UE8 772 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 CPXCR1Q8N123 301 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 CHST13Q8NET6 341 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 RAVER2Q9HCJ3 691 aaKnown RBP13.15□□□□□ -0.3
DDX41-216ENST00000513562 IL1RAPL2Q9NP60 686 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 NYAP2Q9P242 653 aa13.15□□□□□ -0.3
DDX41-216ENST00000513562 EPOPA6NHQ4 379 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 ZBBXA8MT70 800 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 RFXAPO00287 272 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 CA3P07451 260 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 PFKMP08237 780 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 SLC4A3P48751 1232 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 OAZ1P54368 228 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 TMEM67Q5HYA8 995 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 CTR9Q6PD62 1173 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 FAM133AQ8N9E0 248 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 DDRGK1Q96HY6 314 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 SCLYQ96I15 445 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 AGBL1Q96MI9 1066 aa13.14□□□□□ -0.31
DDX41-216ENST00000513562 CNTN2Q02246 1040 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 TTLL4Q14679 1199 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 HSP90AB4PQ58FF6 505 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 NOL8Q76FK4 1167 aaKnown RBP13.13□□□□□ -0.31
DDX41-216ENST00000513562 ITPRIPQ8IWB1 547 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 RHPN1Q8TCX5 695 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 KHSRPQ92945 711 aaKnown RBP eCLIP13.13□□□□□ -0.31
DDX41-216ENST00000513562 KIFC2Q96AC6 838 aa13.13□□□□□ -0.31
DDX41-216ENST00000513562 ALDH8A1Q9H2A2 487 aaPredicted RBP13.13□□□□□ -0.31
DDX41-216ENST00000513562 CTDP1Q9Y5B0 961 aaPredicted RBP13.13□□□□□ -0.31
DDX41-216ENST00000513562 ZNFX1Q9P2E3 1918 aaKnown RBP13.13□□□□□ -0.31
DDX41-216ENST00000513562 ZEB2O60315 1214 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 CHGBP05060 677 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 SMPD1P17405 629 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 RASA1P20936 1047 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 PTGS1P23219 599 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 PSMC6P62333 389 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 KRT40Q6A162 431 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 FTSJ3Q8IY81 847 aaKnown RBP13.12□□□□□ -0.31
DDX41-216ENST00000513562 HLA-CQ95604 372 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.12□□□□□ -0.31
DDX41-216ENST00000513562 AP5M1Q9H0R1 490 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 CERS4Q9HA82 394 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 PAG1Q9NWQ8 432 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 ARPP21Q9UBL0 812 aaPredicted RBP13.12□□□□□ -0.31
DDX41-216ENST00000513562 SLC4A4Q9Y6R1 1079 aa13.12□□□□□ -0.31
DDX41-216ENST00000513562 IGKV6D-41A0A0C4DH26 115 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 SOWAHBA6NEL2 793 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 ASB14A6NK59 587 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 DYNC1LI2O43237 492 aaPredicted RBP13.11□□□□□ -0.31
DDX41-216ENST00000513562 ARHGEF15O94989 841 aa13.11□□□□□ -0.31
DDX41-216ENST00000513562 RLBP1P12271 317 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms