RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	TCRBV5S4A2T	A0A5A2	114 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	PRKAB2	O43741	272 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	B4GALT4	O60513	344 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	LPXN	O60711	386 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	CA3	P07451	260 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	CT47B1	P0C2W7	299 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	ATP2A2	P16615	1042 aa	Known RBP	13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	ITGA7	Q13683	1181 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	SLFNL1	Q499Z3	407 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	TMEM63B	Q5T3F8	832 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	LCORL	Q8N3X6	602 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	HLA-C	Q95604	372 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	NUP88	Q99567	741 aa	Predicted RBP	13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	SWAP70	Q9UH65	585 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	LRRC37A2	A6NM11	1700 aa		13.55	□□□□□ -0.24
RNF4-218	ENST00000513284	MCM3AP	O60318	1980 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	TRIM27	P14373	513 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	PDE6A	P16499	860 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	COPB2	P35606	906 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	CDK8	P49336	464 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	TAP1	Q03518	808 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	TMEM67	Q5HYA8	995 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	SNRNP48	Q6IEG0	339 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	TMED8	Q6PL24	325 aa	Predicted RBP	13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	RPUSD2	Q8IZ73	545 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	TEX13B	Q9BXU2	312 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	SH2D4A	Q9H788	454 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	SPC25	Q9HBM1	224 aa		13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	GNE	Q9Y223	722 aa	Known RBP	13.54	□□□□□ -0.24
RNF4-218	ENST00000513284	NAV1	Q8NEY1	1877 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	MRE11	P49959	708 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	OS9	Q13438	667 aa	Predicted RBP	13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	SLC9C2	Q5TAH2	1124 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	C12orf60	Q5U649	245 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	ARMCX2	Q7L311	632 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	CCDC144CP	Q8IYA2	1237 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	CCDC17	Q96LX7	622 aa		13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	DDX49	Q9Y6V7	483 aa	Known RBP	13.53	□□□□□ -0.24
RNF4-218	ENST00000513284	ZBBX	A8MT70	800 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	ATP2A1	O14983	1001 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	GTPBP6	O43824	516 aa	Predicted RBP	13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	PSMC6	P62333	389 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	CNTN2	Q02246	1040 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	TNFAIP2	Q03169	654 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	GRB10	Q13322	594 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	CPXCR1	Q8N123	301 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	ARNTL2	Q8WYA1	636 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	SNX27	Q96L92	541 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	ARMT1	Q9H993	441 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	KANSL2	Q9H9L4	492 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	ZNF532	Q9HCE3	1301 aa		13.52	□□□□□ -0.25
RNF4-218	ENST00000513284	PRR33	A8MZF0	331 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	CHGB	P05060	677 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	SLC4A3	P48751	1232 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	C16orf86	Q6ZW13	317 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	CLUAP1	Q96AJ1	413 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	SLF1	Q9BQI6	1058 aa		13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	RAVER2	Q9HCJ3	691 aa	Known RBP	13.51	□□□□□ -0.25
RNF4-218	ENST00000513284	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	SOWAHB	A6NEL2	793 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	USP17L12	C9JPN9	530 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	USP17L21	D6R901	530 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284		F5H6K3	240 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	RBAK-RBAKDN	I3L0D1	243 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	DYNC1LI2	O43237	492 aa	Predicted RBP	13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	CABYR	O75952	493 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	CYP2C9	P11712	490 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	SMPD1	P17405	629 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	KLRC3	Q07444	240 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	FSCN1	Q16658	493 aa	Known RBP	13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	DEFB128	Q7Z7B8	93 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	TMEM57	Q8N5G2	664 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	FAM133A	Q8N9E0	248 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	PRPF38A	Q8NAV1	312 aa	Known RBP	13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	C1orf115	Q9H7X2	142 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	GOPC	Q9HD26	462 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	PDGFC	Q9NRA1	345 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	SCN5A	Q14524	2016 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	BRWD1	Q9NSI6	2320 aa		13.5	□□□□□ -0.25
RNF4-218	ENST00000513284	RAD21	O60216	631 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	NHLH1	Q02575	133 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	TAPT1	Q6NXT6	567 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	FAM178B	Q8IXR5	827 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	ANKRD35	Q8N283	1001 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	SLC38A10	Q9HBR0	1119 aa		13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	TRMT13	Q9NUP7	481 aa	Known RBP	13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.49	□□□□□ -0.25
RNF4-218	ENST00000513284	TRIO	O75962	3097 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	NDUFB10	O96000	172 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	TLK2	Q86UE8	772 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	HERC6	Q8IVU3	1022 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	GJD3	Q8N144	294 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	PHOSPHO2	Q8TCD6	241 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	ANKS1A	Q92625	1134 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	ATP8A2	Q9NTI2	1148 aa		13.48	□□□□□ -0.25
RNF4-218	ENST00000513284	MYH8	P13535	1937 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms