RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RABGGTAQ92696 567 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 DCAF5Q96JK2 942 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ANGPTL2Q9UKU9 493 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 RNF17Q9BXT8 1623 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 POTEB3A0JP26 581 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 GUCY2FP51841 1108 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 LETM2Q2VYF4 491 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 POTEBQ6S5H4 581 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 KIFAP3Q92845 792 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM227BQ96M60 508 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 AS3MTQ9HBK9 375 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 DIABLOQ9NR28 239 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 SCHIP1Q9P0W5 487 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 WWC3Q9ULE0 1092 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 PYCARDQ9ULZ3 195 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 SLC4A7Q9Y6M7 1214 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ENO4A6NNW6 628 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 CHGBP05060 677 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 MRPS9P82933 396 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 CCDC15Q0P6D6 951 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 PPIP5K1Q6PFW1 1433 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 TEKT1Q969V4 418 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 CEP19Q96LK0 163 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 OLFM3Q96PB7 478 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 TMEM106CQ9BVX2 250 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 UGGT1Q9NYU2 1555 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ZBBXA8MT70 800 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 B4E1Z4 1266 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 TMEM232C9JQI7 657 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 LMNAP02545 664 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ZNF354CQ86Y25 554 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 CCDC89Q8N998 374 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 IQGAP1P46940 1657 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 SGSM2O43147 1006 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 KCNA4P22459 653 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 ITIH3Q06033 890 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 PAK1Q13153 545 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 EP400NLQ6ZTU2 488 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 DIS3L2Q8IYB7 885 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 PARP2Q9UGN5 583 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 CLTCL1P53675 1640 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM170AA1A519 330 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 GIPC1O14908 333 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 DAB1O75553 588 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 FLOT2Q14254 428 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 SV2BQ7L1I2 683 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 CTAGE3PQ8IX95 158 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 ACRBPQ8NEB7 543 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 UBAP1Q9NZ09 502 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 ASIC3Q9UHC3 531 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 ARIH1Q9Y4X5 557 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 SAR1BQ9Y6B6 198 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 MYOM2P54296 1465 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 ELF1P32519 619 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 G2E3Q7L622 706 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 MAGEB6Q8N7X4 407 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 MSANTD4Q8NCY6 345 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 TRIM55Q9BYV6 548 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 DBNLQ9UJU6 430 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 LZTS1Q9Y250 596 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 NOC2LQ9Y3T9 749 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 SART1O43290 800 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 KRT8P05787 483 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 TNFAIP3P21580 790 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 TIMM10P62072 90 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 GPT2Q8TD30 523 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 RAB17Q9H0T7 212 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 TXLNGQ9NUQ3 528 aa9.55□□□□□ -0.88
LIMCH1-218ENST00000513024 HOXD10P28358 340 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 MTHFSDQ2M296 383 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 RSBN1LQ6PCB5 846 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 ZC3H18Q86VM9 953 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 P3H4Q92791 437 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 POLKQ9UBT6 870 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 MAGEB6P1A0A0J9YX57 407 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 NR1I2O75469 434 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 RPL13P26373 211 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 LONRF2Q1L5Z9 754 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 TTC6Q86TZ1 520 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 HACE1Q8IYU2 909 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 MCM9Q9NXL9 1143 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 RTL9Q8NET4 1388 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 CCDC169A6NNP5 214 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 CUTAO60888 179 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 TTC4O95801 387 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 EEF1B2P24534 225 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 GNA11P29992 359 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 TRPC1P48995 793 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 PIK3AP1Q6ZUJ8 805 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 FLCNQ8NFG4 579 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 STAMBPL1Q96FJ0 436 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 BICC1Q9H694 974 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 PNMA2Q9UL42 364 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 COPG1Q9Y678 874 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 F8W031 263 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 SNX1Q13596 522 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 EIF4A2Q14240 407 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 CC2D2BQ6DHV5 1058 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms