RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 DDTLA6NHG4 134 aaPredicted RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 PARP1P09874 1014 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 ATP1A3P13637 1013 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 H2AFXP16104 143 aaPredicted RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 SARSP49591 514 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 NAA30Q147X3 362 aaPredicted RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 POSTNQ15063 836 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 ELF2Q15723 593 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 RASGRP4Q8TDF6 673 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 SMARCE1Q969G3 411 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 FANCLQ9NW38 375 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 SRPRBQ9Y5M8 271 aaKnown RBP12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 COL4A5P29400 1685 aa12.48□□□□□ -0.41
SH3RF1-203ENST00000508685 HLA-DOAP06340 250 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 TBX2Q13207 712 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SHROOM1Q2M3G4 852 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 CC2D2BQ6DHV5 1058 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 FBXO38Q6PIJ6 1188 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 USP49Q70CQ1 688 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SH3BP5LQ7L8J4 393 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 UBXN4Q92575 508 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 CSRNP2Q9H175 543 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 ZNF277Q9NRM2 450 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 DNAI1Q9UI46 699 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SERPINA10Q9UK55 444 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 FRMPD2Q68DX3 1309 aaPredicted RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 IGKV6D-41A0A0C4DH26 115 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 EFCAB8A8MWE9 144 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 MPHOSPH10O00566 681 aaKnown RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 PDHBP11177 359 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 CDK11BP21127 795 aaKnown RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 MORC3Q14149 939 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 ZNF174Q15697 407 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 TTC38Q5R3I4 469 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SUPT20HQ8NEM7 779 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 MRIQ9BWK5 157 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SPZ1Q9BXG8 430 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 BARHL2Q9NY43 387 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SWAP70Q9UH65 585 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 SIPA1L1O43166 1804 aa12.47□□□□□ -0.41
SH3RF1-203ENST00000508685 KIF13BQ9NQT8 1826 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 STXBP3O00186 592 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 ZNF18P17022 549 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 HDLBPQ00341 1268 aaKnown RBP12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 SPECC1LQ69YQ0 1117 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 ISM2Q6H9L7 571 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 TRIM65Q6PJ69 517 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 FOXP4Q8IVH2 680 aaPredicted RBP12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 ZSCAN29Q8IWY8 852 aaPredicted RBP12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 REXO1L1PQ8IX06 675 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 BLIDQ8IZY5 108 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 MNS1Q8NEH6 495 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 BAG1Q99933 345 aaPredicted RBP12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 IDI2Q9BXS1 227 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 UBA5Q9GZZ9 404 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 VAT1LQ9HCJ6 419 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 SH3GLB2Q9NR46 395 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 MAN1B1Q9UKM7 699 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 PCDHA4Q9UN74 947 aa12.46□□□□□ -0.41
SH3RF1-203ENST00000508685 FOXN1O15353 648 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 RAD17O75943 681 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 TTLL1O95922 423 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 CALML3P27482 149 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 TUBB4BP68371 445 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PDILTQ8N807 584 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PYM1Q9BRP8 204 aaKnown RBP12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 NAA15Q9BXJ9 866 aaKnown RBP12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 EHD4Q9H223 541 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 M0R2N6 131 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 POLR2DO15514 142 aaKnown RBP12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 ATP2B2Q01814 1243 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PTGDRQ13258 359 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 RTKN2Q8IZC4 609 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 LARGE2Q8N3Y3 721 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 SPATA20Q8TB22 786 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 DPF2Q92785 391 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 EPSTI1Q96J88 318 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PRMT6Q96LA8 375 aaPredicted RBP12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 CTAGE1Q96RT6 745 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PIGSQ96S52 555 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PSMD1Q99460 953 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 LZTS2Q9BRK4 669 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 PPP2R2CQ9Y2T4 447 aa12.45□□□□□ -0.42
SH3RF1-203ENST00000508685 MYO3BQ8WXR4 1341 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 YBX3P16989 372 aaKnown RBP eCLIP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 MCM7P33993 719 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 TUBB2AQ13885 445 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 ERCC6LQ2NKX8 1250 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 ZNF771Q7L3S4 317 aaPredicted RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 FERMT2Q96AC1 680 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 TUBB2BQ9BVA1 445 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 DHX36Q9H2U1 1008 aaKnown RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 ZBTB12Q9Y330 459 aaPredicted RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 NFE2L3Q9Y4A8 694 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 GREB1LQ9C091 1923 aaPredicted RBP12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 A0A087X0B3 334 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 VWA3AA6NCI4 1184 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 PSMD14O00487 310 aa12.44□□□□□ -0.42
SH3RF1-203ENST00000508685 GRIN3BO60391 1043 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms