RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 FSD1Q9BTV5 496 aa24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 RAVER2Q9HCJ3 691 aaKnown RBP24.98■■□□□ 1.59
SQSTM1-210ENST00000506042 PLIN4Q96Q06 1357 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 A0A0U1RQG5 324 aaPredicted RBP24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 SMIM22K7EJ46 135 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 ZEB2O60315 1214 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 CCDC129Q6ZRS4 1044 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 NOL8Q76FK4 1167 aaKnown RBP24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 TMEM199Q8N511 208 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 NEDD1Q8NHV4 660 aa24.97■■□□□ 1.59
SQSTM1-210ENST00000506042 PRDM1O75626 825 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 TIMP1P01033 207 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 CHGBP05060 677 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 SLC1A4P43007 532 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 GNASQ5JWF2 1037 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 KLHDC9Q8NEP7 349 aa24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 SYMPKQ92797 1274 aaKnown RBP24.96■■□□□ 1.59
SQSTM1-210ENST00000506042 IGKV6D-41A0A0C4DH26 115 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 CABYRO75952 493 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 SNAI1O95863 264 aaPredicted RBP24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 CCDC144BQ3MJ40 725 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 ARMCX2Q7L311 632 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 LRRC47Q8N1G4 583 aaKnown RBP24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 GMCL1Q96IK5 515 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 RIPK3Q9Y572 518 aa24.95■■□□□ 1.58
SQSTM1-210ENST00000506042 TSPY2A6NKD2 308 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 TMEM232C9JQI7 657 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 ASGR1P07306 291 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 GJA9P57773 515 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 TFAP4Q01664 338 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 FAAP100Q0VG06 881 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 AP5M1Q9H0R1 490 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 HOMER2Q9NSB8 354 aa24.94■■□□□ 1.58
SQSTM1-210ENST00000506042 PPARAQ07869 468 aa24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 MFSD5Q6N075 450 aa24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 PSRC1Q6PGN9 363 aaPredicted RBP24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 STAG1Q8WVM7 1258 aa24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 MPHOSPH6Q99547 160 aaKnown RBP24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 UPF3AQ9H1J1 476 aaKnown RBP24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 EPB41L4AQ9HCS5 686 aaPredicted RBP24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 PNMA2Q9UL42 364 aa24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 STX8Q9UNK0 236 aa24.93■■□□□ 1.58
SQSTM1-210ENST00000506042 M0R2C6 588 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 PLA2G6O60733 806 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 TNFAIP2Q03169 654 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 CCDC144CPQ8IYA2 1237 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 LENG1Q96BZ8 264 aaPredicted RBP24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 RNF146Q9NTX7 359 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 COL6A3P12111 3177 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 DNAH12Q6ZR08 3092 aa24.92■■□□□ 1.58
SQSTM1-210ENST00000506042 ARVCFO00192 962 aa24.91■■□□□ 1.58
SQSTM1-210ENST00000506042 MYLIPQ8WY64 445 aa24.91■■□□□ 1.58
SQSTM1-210ENST00000506042 COL25A1Q9BXS0 654 aaPredicted RBP24.91■■□□□ 1.58
SQSTM1-210ENST00000506042 C20orf194Q5TEA3 1177 aa24.9■■□□□ 1.58
SQSTM1-210ENST00000506042 GAS2L1Q99501 681 aaPredicted RBP24.9■■□□□ 1.58
SQSTM1-210ENST00000506042 DNAJB2P25686 324 aa24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 TSHZ3Q63HK5 1081 aa24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 CCSAPQ6IQ19 270 aaPredicted RBP24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 TRERF1Q96PN7 1200 aa24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 ADD3Q9UEY8 706 aaKnown RBP24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 TBX21Q9UL17 535 aa24.89■■□□□ 1.58
SQSTM1-210ENST00000506042 ALAS1P13196 640 aa24.88■■□□□ 1.57
SQSTM1-210ENST00000506042 MX1P20591 662 aa24.88■■□□□ 1.57
SQSTM1-210ENST00000506042 ZMYM1Q5SVZ6 1142 aa24.88■■□□□ 1.57
SQSTM1-210ENST00000506042 RCSD1Q6JBY9 416 aa24.88■■□□□ 1.57
SQSTM1-210ENST00000506042 TIFAQ96CG3 184 aa24.88■■□□□ 1.57
SQSTM1-210ENST00000506042 IQSEC1Q6DN90 963 aa24.87■■□□□ 1.57
SQSTM1-210ENST00000506042 FAM133AQ8N9E0 248 aa24.87■■□□□ 1.57
SQSTM1-210ENST00000506042 MSRAQ9UJ68 235 aa24.87■■□□□ 1.57
SQSTM1-210ENST00000506042 Q9Y3F1 56 aa24.87■■□□□ 1.57
SQSTM1-210ENST00000506042 LOC102724159A0A0B4J2E5 919 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 B4DLN1 442 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 MCCP23508 829 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 ITGB8P26012 769 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 CDK7P50613 346 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 MRPL12P52815 198 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 PWP2Q15269 919 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 RAB30Q15771 203 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 CCDC96Q2M329 555 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 BRDTQ58F21 947 aaPredicted RBP24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 TLK2Q86UE8 772 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 TICAM2Q86XR7 235 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 DCAF4Q8WV16 495 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 TTYH1Q9H313 450 aaPredicted RBP24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 A1CFQ9NQ94 594 aaKnown RBP24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 TOMM22Q9NS69 142 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 CCPG1Q9ULG6 757 aa24.86■■□□□ 1.57
SQSTM1-210ENST00000506042 RANBP6O60518 1105 aaKnown RBP24.85■■□□□ 1.57
SQSTM1-210ENST00000506042 NKX3-2P78367 333 aa24.85■■□□□ 1.57
SQSTM1-210ENST00000506042 FSCN1Q16658 493 aaKnown RBP24.85■■□□□ 1.57
SQSTM1-210ENST00000506042 ZNF576Q9H609 170 aa24.85■■□□□ 1.57
SQSTM1-210ENST00000506042 VTA1Q9NP79 307 aa24.85■■□□□ 1.57
SQSTM1-210ENST00000506042 EPHB4P54760 987 aa24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 FAM126BQ8IXS8 530 aa24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 RPUSD2Q8IZ73 545 aaKnown RBP24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 EVI5LQ96CN4 794 aa24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 PPP1R12CQ9BZL4 782 aa24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 RAD50Q92878 1312 aa24.84■■□□□ 1.57
SQSTM1-210ENST00000506042 MYADML2A6NDP7 307 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms